| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is ifcA [H]
Identifier: 119714467
GI number: 119714467
Start: 214931
End: 216397
Strand: Reverse
Name: ifcA [H]
Synonym: Noca_0200
Alternate gene names: 119714467
Gene position: 216397-214931 (Counterclockwise)
Preceding gene: 119714468
Following gene: 119714466
Centisome position: 4.34
GC content: 74.85
Gene sequence:
>1467_bases GTGAGCGCCCCCGTGGCGGAGTACGACGTCGTCGTGGTCGGCGGCGGGGTCGCCGGCCTGTCCGCGGCCTGCGCTGCCGC CGAGGCCGGCGCGCGGGTGGTGCTGCTGGAGCGCTCGACCGAGGCCGAGACCGGCGGCAACACCCGCTACACCGAGGCGT TCTTGCGGATGCGCTCGCTCGAGGAGACGGCAGACGGGCTCGAGGACGCCCTGGTCGACGACTTCATGGGCCACCCGGAC CCGAGCGTGGTGCGCGACGCCGCGCTGCCGGCCGAGCGCCGCTCCGCCCTCTACCGCGCCCACCACGTCGTCGACCCCGA CTACGTCGCGACCTTCGCCGCCGAGGCGCCCGAGACGTTGGCCTGGATGGGCGGGCACGGGATGCGCTTCGAGTTCCTGC CGACCCCGTTCCTGACCACCTCGACCACCCGGATGGCGCCGGTCGGCGGCGGCCTGGCGATCGTCGAGACGATGGGCAAG GCCGCCCGCGGCCTCGGCGTCGAGTTCCGCTTCGAGACGACCGCGCGCCGGCTGCTCACCGACCCCGACGGCAGGGCGGG GGTGGCCGGGGTGCTCGCCCACACGCCCACCGGACCGGTGGAGCTGCGCGGCCGGGTCGTGCTCGCGTCGGGCGGCTACC AGGGCAACGCCGAGCTGATGGCGCGCTACCACGGCGAGCGCGGGCTGACCACGCGCCCCGTCGCCCGCGGCGGCAACCAC AACAAGGGCGAGGGCCTGGAGATGGCGCTCGCGCTCGGCGCTGCGACGGCCGGCAACTTCTCGCTCTTCCACGCCGAGCC GGTGGACCCGCGCTCGGGCGAGCCCGAGGCCGCGATCTTCTGCTTCCCCTACGGGATCCTGGTCAACCGCGAGGGCCGCC GCTTCGTCGACGAGGCCCGCGGGCCGGTCGACGCGTGGTACGAGCGCACCACCCGCGACATCCAAGCCCAGACCGAGGGC GTCGCCTGGGTGATCCTCGACCAGCAGGGCCTGGCGGTGCCGAACATCCGCTCCGGCATCCGCACCGACCAGGCGCCGGT GACCGCCGACACCCTGGAGGCGCTCGCCGAGCGCATCGGAGTCCCCGCGGACACGCTGGTCGCGACGGTCGCGTCGTACA ACTCAGCCTGCCGCGACGGGGCGTTCGACCACACGGCCCCCGACGGGCTGGCCACCTCCGGCCTGGTGCCGCCGAAGTCG AACTGGGCGCGCCCGATCGCCGAGGGACCCTTCGAGGCCTACCCGATCATGGCCGCCAACGTGTTCACGTTCGGCGGGCT GAAGACCACCCCGGCGGCCGAGGTGGTCGACCGCGACGGGCGCCCGATCCCCGGCCTGTACGCCGCCGGCGAGCTCACCG GGCTCTACTACTCCAACTACACCGGCTCGACGTCGGTGCTGCGCGGCGCGACGTTCGGCCGGATCGCGGGCAGCGCGGCC GCGGCCACCATCGGGGTCGGCGCATGA
Upstream 100 bases:
>100_bases GCGCGTCGTTCCGTCCGGACTTCCACGAGTTCTCGGTGCAGAACATGCTGCCGCTGTTCGCGACGGTGACCTCTGCGAAC GAGCTGATCGGCGGGCTGTC
Downstream 100 bases:
>100_bases GGATCTGGCACCAGAGCTTCACCGTCCTCGACGACGTCCCGCACTACCGCGACGCGCTCCAGCGGCACCTGACCGCCCAG GCCGCGCCCGGCACGACCGT
Product: fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MSAPVAEYDVVVVGGGVAGLSAACAAAEAGARVVLLERSTEAETGGNTRYTEAFLRMRSLEETADGLEDALVDDFMGHPD PSVVRDAALPAERRSALYRAHHVVDPDYVATFAAEAPETLAWMGGHGMRFEFLPTPFLTTSTTRMAPVGGGLAIVETMGK AARGLGVEFRFETTARRLLTDPDGRAGVAGVLAHTPTGPVELRGRVVLASGGYQGNAELMARYHGERGLTTRPVARGGNH NKGEGLEMALALGAATAGNFSLFHAEPVDPRSGEPEAAIFCFPYGILVNREGRRFVDEARGPVDAWYERTTRDIQAQTEG VAWVILDQQGLAVPNIRSGIRTDQAPVTADTLEALAERIGVPADTLVATVASYNSACRDGAFDHTAPDGLATSGLVPPKS NWARPIAEGPFEAYPIMAANVFTFGGLKTTPAAEVVDRDGRPIPGLYAAGELTGLYYSNYTGSTSVLRGATFGRIAGSAA AATIGVGA
Sequences:
>Translated_488_residues MSAPVAEYDVVVVGGGVAGLSAACAAAEAGARVVLLERSTEAETGGNTRYTEAFLRMRSLEETADGLEDALVDDFMGHPD PSVVRDAALPAERRSALYRAHHVVDPDYVATFAAEAPETLAWMGGHGMRFEFLPTPFLTTSTTRMAPVGGGLAIVETMGK AARGLGVEFRFETTARRLLTDPDGRAGVAGVLAHTPTGPVELRGRVVLASGGYQGNAELMARYHGERGLTTRPVARGGNH NKGEGLEMALALGAATAGNFSLFHAEPVDPRSGEPEAAIFCFPYGILVNREGRRFVDEARGPVDAWYERTTRDIQAQTEG VAWVILDQQGLAVPNIRSGIRTDQAPVTADTLEALAERIGVPADTLVATVASYNSACRDGAFDHTAPDGLATSGLVPPKS NWARPIAEGPFEAYPIMAANVFTFGGLKTTPAAEVVDRDGRPIPGLYAAGELTGLYYSNYTGSTSVLRGATFGRIAGSAA AATIGVGA >Mature_487_residues SAPVAEYDVVVVGGGVAGLSAACAAAEAGARVVLLERSTEAETGGNTRYTEAFLRMRSLEETADGLEDALVDDFMGHPDP SVVRDAALPAERRSALYRAHHVVDPDYVATFAAEAPETLAWMGGHGMRFEFLPTPFLTTSTTRMAPVGGGLAIVETMGKA ARGLGVEFRFETTARRLLTDPDGRAGVAGVLAHTPTGPVELRGRVVLASGGYQGNAELMARYHGERGLTTRPVARGGNHN KGEGLEMALALGAATAGNFSLFHAEPVDPRSGEPEAAIFCFPYGILVNREGRRFVDEARGPVDAWYERTTRDIQAQTEGV AWVILDQQGLAVPNIRSGIRTDQAPVTADTLEALAERIGVPADTLVATVASYNSACRDGAFDHTAPDGLATSGLVPPKSN WARPIAEGPFEAYPIMAANVFTFGGLKTTPAAEVVDRDGRPIPGLYAAGELTGLYYSNYTGSTSVLRGATFGRIAGSAAA ATIGVGA
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 51135; Mature: 51004
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPVAEYDVVVVGGGVAGLSAACAAAEAGARVVLLERSTEAETGGNTRYTEAFLRMRSL CCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH EETADGLEDALVDDFMGHPDPSVVRDAALPAERRSALYRAHHVVDPDYVATFAAEAPETL HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCE AWMGGHGMRFEFLPTPFLTTSTTRMAPVGGGLAIVETMGKAARGLGVEFRFETTARRLLT EEECCCCCEEEECCCCCEECCCCEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHC DPDGRAGVAGVLAHTPTGPVELRGRVVLASGGYQGNAELMARYHGERGLTTRPVARGGNH CCCCCCCCEEEEEECCCCCEEECCEEEEEECCCCCCHHHHEEECCCCCCCCCCHHCCCCC NKGEGLEMALALGAATAGNFSLFHAEPVDPRSGEPEAAIFCFPYGILVNREGRRFVDEAR CCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHHCC GPVDAWYERTTRDIQAQTEGVAWVILDQQGLAVPNIRSGIRTDQAPVTADTLEALAERIG CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHC VPADTLVATVASYNSACRDGAFDHTAPDGLATSGLVPPKSNWARPIAEGPFEAYPIMAAN CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE VFTFGGLKTTPAAEVVDRDGRPIPGLYAAGELTGLYYSNYTGSTSVLRGATFGRIAGSAA EEEECCCCCCCHHHHHCCCCCCCCCEEECCCEEEEEEECCCCCCHHHCCCCHHHHCCCHH AATIGVGA HEEECCCC >Mature Secondary Structure SAPVAEYDVVVVGGGVAGLSAACAAAEAGARVVLLERSTEAETGGNTRYTEAFLRMRSL CCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH EETADGLEDALVDDFMGHPDPSVVRDAALPAERRSALYRAHHVVDPDYVATFAAEAPETL HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCE AWMGGHGMRFEFLPTPFLTTSTTRMAPVGGGLAIVETMGKAARGLGVEFRFETTARRLLT EEECCCCCEEEECCCCCEECCCCEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHC DPDGRAGVAGVLAHTPTGPVELRGRVVLASGGYQGNAELMARYHGERGLTTRPVARGGNH CCCCCCCCEEEEEECCCCCEEECCEEEEEECCCCCCHHHHEEECCCCCCCCCCHHCCCCC NKGEGLEMALALGAATAGNFSLFHAEPVDPRSGEPEAAIFCFPYGILVNREGRRFVDEAR CCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHHCC GPVDAWYERTTRDIQAQTEGVAWVILDQQGLAVPNIRSGIRTDQAPVTADTLEALAERIG CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHC VPADTLVATVASYNSACRDGAFDHTAPDGLATSGLVPPKSNWARPIAEGPFEAYPIMAAN CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE VFTFGGLKTTPAAEVVDRDGRPIPGLYAAGELTGLYYSNYTGSTSVLRGATFGRIAGSAA EEEECCCCCCCHHHHHCCCCCCCCCEEECCCEEEEEEECCCCCCHHHCCCCHHHHCCCHH AATIGVGA HEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]