| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714395
Identifier: 119714395
GI number: 119714395
Start: 140747
End: 142054
Strand: Direct
Name: 119714395
Synonym: Noca_0128
Alternate gene names: NA
Gene position: 140747-142054 (Clockwise)
Preceding gene: 119714393
Following gene: 119714396
Centisome position: 2.82
GC content: 74.01
Gene sequence:
>1308_bases GTGGGGAGGCCCGGCCGCACGGCCCTGCGGGCGGACCGGCGACGCCGGCTCACGACGTACCCTGGCCCGGGGAGGGATGT GATGCGAGTCAGGCGCGCGCGGAGCACGGCGGTGCTGGGACTCGCCGCGCTCCTCGGCGCCCTGACGACCGCCTGCACGG GGCCGTCCGAGGCGGGTGACCCCACGCCCGACAGCTCCTCGACCGCGACGGCCAGCGCCGGCAGCCCGACGGCCTCGCCC GCCCTCGACCCCGCCCACGCCGTCGACCCACCGGGCCGCCGCACCGGCCTGATCTCCCCGCCGGACATCGTGGCCTCCGG GTCGAAGACCATCGCCCCCGGCCGGGTGCGGGCCATCGAGCGGCTCGCGGGCGTCGTCGACGTCGAGCAGGTCTCGCTGG TCCAGGTCGTCGTCGAGAACCGGGCACTGAGCGTGGCCGCGGTCGACCCGACGACGTACCGCAACTTCGTCGTCAACGCC GACAGCGCCAAGGCCGACGACGTCTGGGACCGGGTCGCCGGCGGGGAGCTCGCGCTGCGGCCGGCCCTGCAGAAGCGGGC GCCGATCGACGAGAACGGCTTCCTCAAGCTGGGCAGCGCGGAGGATGCGCCCCAGGTGCACGTCGGCGCCTACGCGCAGC AGTCCTGGCTGGTCGACGCGGTCGTCAACGAGACCTGGATCCCGACGCTCGGGATGACCGAGGGCAACGCACTGCTGATC CGCACCGGCGGCACCTCGCCGGAGACGCTGCGCGCGCCGATCCAGCGGATCCTGCGCGGCACCGGGGCCGCGCCGCAGAT GACCGACGTGGTCGCCCGCGAGGGCCTCGACCCCGGCGCCGTGCAGACGGTCGTGGTGGTCGGCTCGATCGCCGACGCCA TCGGCACCTTCCGCTACAGCGTCCTCGCCGGGGGCCGGATCGCGCCGGACCCGGCGTGGGTCGCCTCGCACATCGCGACC AGGACGGTCCCGATCCTCGGCACCGTCACCTGCAACCGGCTGATGTTCCCGCAGCTCGAGGCGGCGCTGCGCGACGTGGT CGCCCAGGGCCTCACCGACAAGATCCACCCGGGCGAGTACGCCGGCTGCTACTACCCGCGCTTCATCGCGGGCTCGACCA CGCTCTCCAACCACGCCTTCGGCCTCGCCCTCGACCTCAACGTCCCCGGCAACCAGCGCGGCACGGTCGGCCAGATCGAC CGCGGCGTGGTCGCGATCTTCAAGCACTGGGGCTTCACCTGGGGCGGTGACTGGCGGTACACCGACCCCATGCACTTCGA GATGAACCGGCTGGTGGAGCCGCGGTGA
Upstream 100 bases:
>100_bases GCTCCACCAGGAACCCGGTGACGGCATGCACGATGCCGGGACGGTCGGGACAGGACAGGATCAGCACGAGCTCGGACACG GGGGACAGTCTTCCATCGGG
Downstream 100 bases:
>100_bases GCGGCGCGCCCGCGGCGCCCCGGACGGCCGAGGAGCTGTTCCGCGCCGACCCGGCCGGCCTGGCGGCGTACCGGATCGTG CACGAGGCCCTCGTCGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MGRPGRTALRADRRRRLTTYPGPGRDVMRVRRARSTAVLGLAALLGALTTACTGPSEAGDPTPDSSSTATASAGSPTASP ALDPAHAVDPPGRRTGLISPPDIVASGSKTIAPGRVRAIERLAGVVDVEQVSLVQVVVENRALSVAAVDPTTYRNFVVNA DSAKADDVWDRVAGGELALRPALQKRAPIDENGFLKLGSAEDAPQVHVGAYAQQSWLVDAVVNETWIPTLGMTEGNALLI RTGGTSPETLRAPIQRILRGTGAAPQMTDVVAREGLDPGAVQTVVVVGSIADAIGTFRYSVLAGGRIAPDPAWVASHIAT RTVPILGTVTCNRLMFPQLEAALRDVVAQGLTDKIHPGEYAGCYYPRFIAGSTTLSNHAFGLALDLNVPGNQRGTVGQID RGVVAIFKHWGFTWGGDWRYTDPMHFEMNRLVEPR
Sequences:
>Translated_435_residues MGRPGRTALRADRRRRLTTYPGPGRDVMRVRRARSTAVLGLAALLGALTTACTGPSEAGDPTPDSSSTATASAGSPTASP ALDPAHAVDPPGRRTGLISPPDIVASGSKTIAPGRVRAIERLAGVVDVEQVSLVQVVVENRALSVAAVDPTTYRNFVVNA DSAKADDVWDRVAGGELALRPALQKRAPIDENGFLKLGSAEDAPQVHVGAYAQQSWLVDAVVNETWIPTLGMTEGNALLI RTGGTSPETLRAPIQRILRGTGAAPQMTDVVAREGLDPGAVQTVVVVGSIADAIGTFRYSVLAGGRIAPDPAWVASHIAT RTVPILGTVTCNRLMFPQLEAALRDVVAQGLTDKIHPGEYAGCYYPRFIAGSTTLSNHAFGLALDLNVPGNQRGTVGQID RGVVAIFKHWGFTWGGDWRYTDPMHFEMNRLVEPR >Mature_434_residues GRPGRTALRADRRRRLTTYPGPGRDVMRVRRARSTAVLGLAALLGALTTACTGPSEAGDPTPDSSSTATASAGSPTASPA LDPAHAVDPPGRRTGLISPPDIVASGSKTIAPGRVRAIERLAGVVDVEQVSLVQVVVENRALSVAAVDPTTYRNFVVNAD SAKADDVWDRVAGGELALRPALQKRAPIDENGFLKLGSAEDAPQVHVGAYAQQSWLVDAVVNETWIPTLGMTEGNALLIR TGGTSPETLRAPIQRILRGTGAAPQMTDVVAREGLDPGAVQTVVVVGSIADAIGTFRYSVLAGGRIAPDPAWVASHIATR TVPILGTVTCNRLMFPQLEAALRDVVAQGLTDKIHPGEYAGCYYPRFIAGSTTLSNHAFGLALDLNVPGNQRGTVGQIDR GVVAIFKHWGFTWGGDWRYTDPMHFEMNRLVEPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46007; Mature: 45876
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRPGRTALRADRRRRLTTYPGPGRDVMRVRRARSTAVLGLAALLGALTTACTGPSEAGD CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PTPDSSSTATASAGSPTASPALDPAHAVDPPGRRTGLISPPDIVASGSKTIAPGRVRAIE CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHH RLAGVVDVEQVSLVQVVVENRALSVAAVDPTTYRNFVVNADSAKADDVWDRVAGGELALR HHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEC PALQKRAPIDENGFLKLGSAEDAPQVHVGAYAQQSWLVDAVVNETWIPTLGMTEGNALLI HHHHHCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE RTGGTSPETLRAPIQRILRGTGAAPQMTDVVAREGLDPGAVQTVVVVGSIADAIGTFRYS EECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHH VLAGGRIAPDPAWVASHIATRTVPILGTVTCNRLMFPQLEAALRDVVAQGLTDKIHPGEY HHCCCCCCCCHHHHHHHHHHHCCCEEEEEHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCC AGCYYPRFIAGSTTLSNHAFGLALDLNVPGNQRGTVGQIDRGVVAIFKHWGFTWGGDWRY CCCCCCEEECCCCEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE TDPMHFEMNRLVEPR CCCCHHHHHHCCCCC >Mature Secondary Structure GRPGRTALRADRRRRLTTYPGPGRDVMRVRRARSTAVLGLAALLGALTTACTGPSEAGD CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PTPDSSSTATASAGSPTASPALDPAHAVDPPGRRTGLISPPDIVASGSKTIAPGRVRAIE CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHH RLAGVVDVEQVSLVQVVVENRALSVAAVDPTTYRNFVVNADSAKADDVWDRVAGGELALR HHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEC PALQKRAPIDENGFLKLGSAEDAPQVHVGAYAQQSWLVDAVVNETWIPTLGMTEGNALLI HHHHHCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE RTGGTSPETLRAPIQRILRGTGAAPQMTDVVAREGLDPGAVQTVVVVGSIADAIGTFRYS EECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHH VLAGGRIAPDPAWVASHIATRTVPILGTVTCNRLMFPQLEAALRDVVAQGLTDKIHPGEY HHCCCCCCCCHHHHHHHHHHHCCCEEEEEHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCC AGCYYPRFIAGSTTLSNHAFGLALDLNVPGNQRGTVGQIDRGVVAIFKHWGFTWGGDWRY CCCCCCEEECCCCEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE TDPMHFEMNRLVEPR CCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA