| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714373
Identifier: 119714373
GI number: 119714373
Start: 119154
End: 119783
Strand: Direct
Name: 119714373
Synonym: Noca_0106
Alternate gene names: NA
Gene position: 119154-119783 (Clockwise)
Preceding gene: 119714371
Following gene: 119714374
Centisome position: 2.39
GC content: 73.97
Gene sequence:
>630_bases ATGCCCCAAGGGTGCGTGCTTCCTAGCGTCGATCGGGTGACCAGTGCTCGCATCCACCACCCCACCAGCCGCGGCGCCGT CGTCGCGCTCCTCGGTGCCCTGCTGACTCTCGCCGCCTGCGGCGACGGGACCGGGGCCGCCCCCGCTGCAACGCAGGGGC GACCCCAGGCTCACGAGCGGTCGGCAGCGCCGGAGTCGGCCCGCCTCGACCGCGTCGGTCTCGAACCGGGCCGCCTGGGC ATCGGCCGGGTCGACGTCGCCCGGCTCGAGCCGGACCTGCGCGCTGCCCTGGAGGAGGCCACCCGGGCTGCCGAGGCGGA CGGAGTCGTGATCGAGGTGACCAGCGGGTGGCGCAGCTGGGAGCACCAGGAGCGGCTGCTCGACGAGGCGGTGGTGAAGT ACGGAAGCCTGGACGAAGCGCTCGAGTGCGTCTCGACCCCGGAGGCCTCGGCCCACGTGACGGGGGACGCGGTCGACATC GGCCCGGCCGAGGCAGCCGGTTGGCTGAGCCGGCACGGCTCGGCGTACGGCCTGTGCCAGATCTTCGCCAACGAGGACTG GCACTTCGAGCTCGCGACGACGCCCGGCGGCGAATGCCCGCCGATGTACGCCGACGCCAGCCAGCGCTAG
Upstream 100 bases:
>100_bases ACGCGGTCGGTCACGAGGTAGCTGGGACGACCCGACCCCGGTGCCGAGGAGGGGACCAGGTGCTCTGGCCGCGAGGCGGA CCCGGCGGTACTGCGGGCCG
Downstream 100 bases:
>100_bases CGGCCTCGACCCGACACCGACCGCTCGAGGCCGCCGACCGGCCTGCTGGTAGGACAGGGACCATGAGGATTCGCAGCATC GGCAACGAGACCGTCGGCCG
Product: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
Products: NA
Alternate protein names: D-Alanyl-D-Alanine Carboxypeptidase; VanY-Type Carboxypeptidase; D-Alanyl-D-Alanine Carboxypeptidase Family Protein; M15 Family Peptidase
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MPQGCVLPSVDRVTSARIHHPTSRGAVVALLGALLTLAACGDGTGAAPAATQGRPQAHERSAAPESARLDRVGLEPGRLG IGRVDVARLEPDLRAALEEATRAAEADGVVIEVTSGWRSWEHQERLLDEAVVKYGSLDEALECVSTPEASAHVTGDAVDI GPAEAAGWLSRHGSAYGLCQIFANEDWHFELATTPGGECPPMYADASQR
Sequences:
>Translated_209_residues MPQGCVLPSVDRVTSARIHHPTSRGAVVALLGALLTLAACGDGTGAAPAATQGRPQAHERSAAPESARLDRVGLEPGRLG IGRVDVARLEPDLRAALEEATRAAEADGVVIEVTSGWRSWEHQERLLDEAVVKYGSLDEALECVSTPEASAHVTGDAVDI GPAEAAGWLSRHGSAYGLCQIFANEDWHFELATTPGGECPPMYADASQR >Mature_208_residues PQGCVLPSVDRVTSARIHHPTSRGAVVALLGALLTLAACGDGTGAAPAATQGRPQAHERSAAPESARLDRVGLEPGRLGI GRVDVARLEPDLRAALEEATRAAEADGVVIEVTSGWRSWEHQERLLDEAVVKYGSLDEALECVSTPEASAHVTGDAVDIG PAEAAGWLSRHGSAYGLCQIFANEDWHFELATTPGGECPPMYADASQR
Specific function: Unknown
COG id: COG1876
COG function: function code M; D-alanyl-D-alanine carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21924; Mature: 21792
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQGCVLPSVDRVTSARIHHPTSRGAVVALLGALLTLAACGDGTGAAPAATQGRPQAHER CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH SAAPESARLDRVGLEPGRLGIGRVDVARLEPDLRAALEEATRAAEADGVVIEVTSGWRSW CCCCCHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH EHQERLLDEAVVKYGSLDEALECVSTPEASAHVTGDAVDIGPAEAAGWLSRHGSAYGLCQ HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEECCCCEECCCHHHHHHHHHCCCCEEEEE IFANEDWHFELATTPGGECPPMYADASQR EEECCCEEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure PQGCVLPSVDRVTSARIHHPTSRGAVVALLGALLTLAACGDGTGAAPAATQGRPQAHER CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH SAAPESARLDRVGLEPGRLGIGRVDVARLEPDLRAALEEATRAAEADGVVIEVTSGWRSW CCCCCHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH EHQERLLDEAVVKYGSLDEALECVSTPEASAHVTGDAVDIGPAEAAGWLSRHGSAYGLCQ HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEECCCCEECCCHHHHHHHHHCCCCEEEEE IFANEDWHFELATTPGGECPPMYADASQR EEECCCEEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA