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The map label for this gene is rbsC [H]

Identifier: 119714345

GI number: 119714345

Start: 86221

End: 87216

Strand: Direct

Name: rbsC [H]

Synonym: Noca_0077

Alternate gene names: 119714345

Gene position: 86221-87216 (Clockwise)

Preceding gene: 119714344

Following gene: 119714346

Centisome position: 1.73

GC content: 68.27

Gene sequence:

>996_bases
ATGACTGAGACCAGTACACCCGTGGCAGCGCAGCCGTCGGCGCTCTCCCGGTCCTTCAACCTGCGCGACTACGGCGTCGT
GCTCGGTGCCGTCGCGCTTGTGATCTACCTGTCCCTGTCGACGACCACCTTCCTCACCACCGGCAACCTCACGAACGTGC
TCGACCAGGCGGTCGTCGTGGGCCTGCTGGCGTGCGGGGCGACGATGTGCATCATCAGCGGCGTCTTCGACCTCACGGCC
ACGGCGTCGCTCGCGCTGTCCGCGATCATCGGCGTCGAGGTGACGCAGGCGGCCGGCGTCGAAGCCGGCTTCGTTGCCGC
AGTTCTGGCCGGGGCGGGCCTTGGTGCGTTGACGGGCTTCATCGTCAACGTGAGTACGGCCGTGAACGCCTTCATCGCCA
CGCTTGCCACGAGCATCGTCTACCGGGGGGTCGCCCTCGTGATCACCGGCGGCGCCATCACCTACCCGTTGACCGACCAG
CTCGACGGCGTGCAGGTCTTCACCGACGACGTTCCCGGGCTCGGGATCACCGTCGCGACGGGGACGCTGCTCGTCGTCGC
GGTCGTCATGGGCGTCATGCTGTGGGCCACCAACTTCGGTCGGCGGGTCTACGCGGTCGGAGGCAATGCCGAGGCGGCCC
GGTTGAGCGGCATTCGGGTGGGCTCGGTCCACATCGGGGTCTACATGGCAAGCGGGGTCTGCTCTGCGCTGGCGGGTCTC
GTGCTGGTCGCGCGCAGCGGCGGCGGTGCGCAGGCCAACATGGCGCTCGGCCTAGAGCTCAGCGCGATCGCCGCGGCGGT
GATCGGCGGTACGTCGATCCTGGGCGGCGAGGGCGCGATCTGGCGCGGAATGGTCGGTGTCCTCCTGCTCACGCTGATCA
GCAACGGGTTCAACCTGCTCGGATGGGACACGACCTTCCAGCAGGTCGTCCAGGGCTGCCTCATCCTCGTCGCGATCATC
ACCGACCGCTACATCCGCCGGGTGAGAAGCACGTGA

Upstream 100 bases:

>100_bases
GTCGTGGTGATGCGACACGGACGAGCCGTGGCGGAGTTCGCGCAGAATGCGGCAGCCGGCGACGTGGTGGCGGCCGCCTT
CGGAGATGAGACAAGGAACC

Downstream 100 bases:

>100_bases
CGCCCCCGCATGAGGCGCGCGGCGGGACGCTCGAGGCCCGCACGGCGATTGTCACCGGTGGCTCGACCGGAATCGGGATG
GCGACCGCGCGTTCGCTCGC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTETSTPVAAQPSALSRSFNLRDYGVVLGAVALVIYLSLSTTTFLTTGNLTNVLDQAVVVGLLACGATMCIISGVFDLTA
TASLALSAIIGVEVTQAAGVEAGFVAAVLAGAGLGALTGFIVNVSTAVNAFIATLATSIVYRGVALVITGGAITYPLTDQ
LDGVQVFTDDVPGLGITVATGTLLVVAVVMGVMLWATNFGRRVYAVGGNAEAARLSGIRVGSVHIGVYMASGVCSALAGL
VLVARSGGGAQANMALGLELSAIAAAVIGGTSILGGEGAIWRGMVGVLLLTLISNGFNLLGWDTTFQQVVQGCLILVAII
TDRYIRRVRST

Sequences:

>Translated_331_residues
MTETSTPVAAQPSALSRSFNLRDYGVVLGAVALVIYLSLSTTTFLTTGNLTNVLDQAVVVGLLACGATMCIISGVFDLTA
TASLALSAIIGVEVTQAAGVEAGFVAAVLAGAGLGALTGFIVNVSTAVNAFIATLATSIVYRGVALVITGGAITYPLTDQ
LDGVQVFTDDVPGLGITVATGTLLVVAVVMGVMLWATNFGRRVYAVGGNAEAARLSGIRVGSVHIGVYMASGVCSALAGL
VLVARSGGGAQANMALGLELSAIAAAVIGGTSILGGEGAIWRGMVGVLLLTLISNGFNLLGWDTTFQQVVQGCLILVAII
TDRYIRRVRST
>Mature_330_residues
TETSTPVAAQPSALSRSFNLRDYGVVLGAVALVIYLSLSTTTFLTTGNLTNVLDQAVVVGLLACGATMCIISGVFDLTAT
ASLALSAIIGVEVTQAAGVEAGFVAAVLAGAGLGALTGFIVNVSTAVNAFIATLATSIVYRGVALVITGGAITYPLTDQL
DGVQVFTDDVPGLGITVATGTLLVVAVVMGVMLWATNFGRRVYAVGGNAEAARLSGIRVGSVHIGVYMASGVCSALAGLV
LVARSGGGAQANMALGLELSAIAAAVIGGTSILGGEGAIWRGMVGVLLLTLISNGFNLLGWDTTFQQVVQGCLILVAIIT
DRYIRRVRST

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=332, Percent_Identity=36.4457831325301, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=37.0860927152318, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788896, Length=334, Percent_Identity=35.0299401197605, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI145693152, Length=338, Percent_Identity=32.8402366863905, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=32.5174825174825, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=42.8571428571429, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693214, Length=298, Percent_Identity=31.2080536912752, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=31.9298245614035, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787794, Length=269, Percent_Identity=28.6245353159851, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788471, Length=222, Percent_Identity=31.981981981982, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33371; Mature: 33240

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00287 CYSTATIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETSTPVAAQPSALSRSFNLRDYGVVLGAVALVIYLSLSTTTFLTTGNLTNVLDQAVVV
CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHH
GLLACGATMCIISGVFDLTATASLALSAIIGVEVTQAAGVEAGFVAAVLAGAGLGALTGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHHCCCHHHHHHH
IVNVSTAVNAFIATLATSIVYRGVALVITGGAITYPLTDQLDGVQVFTDDVPGLGITVAT
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEECCCCCCCCEEEEECCCCCCEEEHHH
GTLLVVAVVMGVMLWATNFGRRVYAVGGNAEAARLSGIRVGSVHIGVYMASGVCSALAGL
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEEEEEHHHHHHHHHHHHHH
VLVARSGGGAQANMALGLELSAIAAAVIGGTSILGGEGAIWRGMVGVLLLTLISNGFNLL
HEEEECCCCCCCEEEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEE
GWDTTFQQVVQGCLILVAIITDRYIRRVRST
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TETSTPVAAQPSALSRSFNLRDYGVVLGAVALVIYLSLSTTTFLTTGNLTNVLDQAVVV
CCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHH
GLLACGATMCIISGVFDLTATASLALSAIIGVEVTQAAGVEAGFVAAVLAGAGLGALTGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHHCCCHHHHHHH
IVNVSTAVNAFIATLATSIVYRGVALVITGGAITYPLTDQLDGVQVFTDDVPGLGITVAT
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEECCCCCCCCEEEEECCCCCCEEEHHH
GTLLVVAVVMGVMLWATNFGRRVYAVGGNAEAARLSGIRVGSVHIGVYMASGVCSALAGL
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEEEEEHHHHHHHHHHHHHH
VLVARSGGGAQANMALGLELSAIAAAVIGGTSILGGEGAIWRGMVGVLLLTLISNGFNLL
HEEEECCCCCCCEEEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEE
GWDTTFQQVVQGCLILVAIITDRYIRRVRST
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]