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The map label for this gene is rbsB [C]

Identifier: 119714343

GI number: 119714343

Start: 83670

End: 84680

Strand: Direct

Name: rbsB [C]

Synonym: Noca_0075

Alternate gene names: 119714343

Gene position: 83670-84680 (Clockwise)

Preceding gene: 119714342

Following gene: 119714344

Centisome position: 1.68

GC content: 67.66

Gene sequence:

>1011_bases
ATGCACAAGATCGTTCGAGCTGCCGCCGTCGGTGTGGCCCTCAGTTCCGCCCTCTTCCTCTCGGCGTGCAGCGACACGGC
TGAAACCGCAGACGCCGGATCGACCTCGGACGAGTCGCTGAGCATCGGGTTCTTCGGCTTCTCGAAGACGAACTCGTTCG
CGCAGGCGGCCTTCGCGGGAATCAGTGAGTACGCCGAGGCGAACGACGCCACCGCGGAGTTCACCGACCCGAACTTCGAC
GTGCAGGTGCAGCTCCAGCAGTTGAAGGACGCGCTCACCAGCAAGCGCTTTGACGTCTGGATCGTGCAGGCGAACGACGG
GGTTGCCGTTCAGCAGACGATCCAGGAGGCCGTCGACGCCGGCATCACCGTCGTCGCCGAGTTCACCCCGATCGGCCCGG
ACTTCGAGACCCTGAAGCCGCAGATCCCCGGGACGCTGAGTCTCGTCGACGACCCGAAGCGGAACGGCACGGTGCTCGGT
GAGCTCAGCATCGACGCCTGTGCGGACGCCGGTGCGGACCCCTGCGAGGTCGCGTACCTGCAGGGCTTCAGTGCGCAGCC
CATCGACGTGGTGCGGACCGACGCGTTCCTGGCGGCCGTGGACCGGCCGGGCGTCGAGGTTGTGGCCAACGTCGAGGGGG
GTTACGCCCAGGACACCGGCCGCGCCGCGGTCCAGGACATCCTCCAGGCGAACCCGGACGTGGACGTGATCGCAGGCGCG
TCCTCGGCTGCGCTGCTCGGCGCGATCGAGCTTCCCGGTATCGATGACGTCCGCATCGTCGGCAACGGCAGTTCGACGCA
GGCCGTGACCGCAGTCCAGGACGGTGACTTCTACGCCGTGTACGTGTTCGCGGAGAAGACCGCTGGCGCCAAGGCGGCCG
AGATGGGTCTCGCCGCCGCCCGCGGCGAAGAGGTCGACCCGGCGTACGTCGGCTACGACGAGCTGACCCCGTTCGGCGTA
CTGGGCACCAAGGAGAATCTCGACGGCTACACCGGCGAGTACTCGGACTGA

Upstream 100 bases:

>100_bases
GCTCATGACAGCGGTGTTTCTTTCAATGAACATTCTTCCAATGGAGTGAACACTGTGGTAGACATCTCGCGTCTCGCAAG
AAGCGACCAAGGAGATGTCG

Downstream 100 bases:

>100_bases
TCGAGTGGCAGCGGAGGGGCACCGATGATGACGTCGGTAGCGCAGCGTAACGGGCTGAGCATCTCGGCCCGCGGCGTCGG
CAAGAGCTATGGGGGCGTCT

Product: sugar ABC transporter periplasmic component-like protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MHKIVRAAAVGVALSSALFLSACSDTAETADAGSTSDESLSIGFFGFSKTNSFAQAAFAGISEYAEANDATAEFTDPNFD
VQVQLQQLKDALTSKRFDVWIVQANDGVAVQQTIQEAVDAGITVVAEFTPIGPDFETLKPQIPGTLSLVDDPKRNGTVLG
ELSIDACADAGADPCEVAYLQGFSAQPIDVVRTDAFLAAVDRPGVEVVANVEGGYAQDTGRAAVQDILQANPDVDVIAGA
SSAALLGAIELPGIDDVRIVGNGSSTQAVTAVQDGDFYAVYVFAEKTAGAKAAEMGLAAARGEEVDPAYVGYDELTPFGV
LGTKENLDGYTGEYSD

Sequences:

>Translated_336_residues
MHKIVRAAAVGVALSSALFLSACSDTAETADAGSTSDESLSIGFFGFSKTNSFAQAAFAGISEYAEANDATAEFTDPNFD
VQVQLQQLKDALTSKRFDVWIVQANDGVAVQQTIQEAVDAGITVVAEFTPIGPDFETLKPQIPGTLSLVDDPKRNGTVLG
ELSIDACADAGADPCEVAYLQGFSAQPIDVVRTDAFLAAVDRPGVEVVANVEGGYAQDTGRAAVQDILQANPDVDVIAGA
SSAALLGAIELPGIDDVRIVGNGSSTQAVTAVQDGDFYAVYVFAEKTAGAKAAEMGLAAARGEEVDPAYVGYDELTPFGV
LGTKENLDGYTGEYSD
>Mature_336_residues
MHKIVRAAAVGVALSSALFLSACSDTAETADAGSTSDESLSIGFFGFSKTNSFAQAAFAGISEYAEANDATAEFTDPNFD
VQVQLQQLKDALTSKRFDVWIVQANDGVAVQQTIQEAVDAGITVVAEFTPIGPDFETLKPQIPGTLSLVDDPKRNGTVLG
ELSIDACADAGADPCEVAYLQGFSAQPIDVVRTDAFLAAVDRPGVEVVANVEGGYAQDTGRAAVQDILQANPDVDVIAGA
SSAALLGAIELPGIDDVRIVGNGSSTQAVTAVQDGDFYAVYVFAEKTAGAKAAEMGLAAARGEEVDPAYVGYDELTPFGV
LGTKENLDGYTGEYSD

Specific function: Involved In The High-Affinity D-Ribose Membrane Transport System And Also Serves As The Primary Chemoreceptor For Chemotaxis. [C]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34787; Mature: 34787

Theoretical pI: Translated: 3.73; Mature: 3.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKIVRAAAVGVALSSALFLSACSDTAETADAGSTSDESLSIGFFGFSKTNSFAQAAFAG
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
ISEYAEANDATAEFTDPNFDVQVQLQQLKDALTSKRFDVWIVQANDGVAVQQTIQEAVDA
HHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
GITVVAEFTPIGPDFETLKPQIPGTLSLVDDPKRNGTVLGELSIDACADAGADPCEVAYL
CEEEEEEECCCCCCHHHCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHCCCCCHHEEHEE
QGFSAQPIDVVRTDAFLAAVDRPGVEVVANVEGGYAQDTGRAAVQDILQANPDVDVIAGA
CCCCCCCCCEEECCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECC
SSAALLGAIELPGIDDVRIVGNGSSTQAVTAVQDGDFYAVYVFAEKTAGAKAAEMGLAAA
CCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCEEEEEEEEECCCCCHHHHHCHHHH
RGEEVDPAYVGYDELTPFGVLGTKENLDGYTGEYSD
CCCCCCCCEECHHHCCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MHKIVRAAAVGVALSSALFLSACSDTAETADAGSTSDESLSIGFFGFSKTNSFAQAAFAG
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
ISEYAEANDATAEFTDPNFDVQVQLQQLKDALTSKRFDVWIVQANDGVAVQQTIQEAVDA
HHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
GITVVAEFTPIGPDFETLKPQIPGTLSLVDDPKRNGTVLGELSIDACADAGADPCEVAYL
CEEEEEEECCCCCCHHHCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHCCCCCHHEEHEE
QGFSAQPIDVVRTDAFLAAVDRPGVEVVANVEGGYAQDTGRAAVQDILQANPDVDVIAGA
CCCCCCCCCEEECCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECC
SSAALLGAIELPGIDDVRIVGNGSSTQAVTAVQDGDFYAVYVFAEKTAGAKAAEMGLAAA
CCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCEEEEEEEEECCCCCHHHHHCHHHH
RGEEVDPAYVGYDELTPFGVLGTKENLDGYTGEYSD
CCCCCCCCEECHHHCCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA