| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714328
Identifier: 119714328
GI number: 119714328
Start: 63995
End: 65443
Strand: Reverse
Name: 119714328
Synonym: Noca_0057
Alternate gene names: NA
Gene position: 65443-63995 (Counterclockwise)
Preceding gene: 119714336
Following gene: 119714327
Centisome position: 1.31
GC content: 66.11
Gene sequence:
>1449_bases TTGCGCACGGCATCGGTCGAGTTCTACGATGGTCAAGCGCGCAAACGTTTCGACGGCAACCGTGCCCCGTGGGCACTTGA AAGGACGATCATGAGTACTGACTTCCGCGGCGGCCTCCTGGGCGAGCTGACCTTGGCCCGCCCCGGGCGCACGGCCCGCG CTTCCAGCTTCGACCAGACGGGACGCAACCGGGACAACTGGATCGTCATGCCAGGCGAGGAGCGCACGCTTGCCGACCTC GAGGGGCCGGGCTTCATCACGCACATCTGGATGACCCAGTCCTGCCGGATCCAACCCGGGCCGAGCCAGATCGACCCCGC GGGCGTGGGGGTTCCCATGCTCGAGATTCACAACGCGCTCGGGGTGAACTGGGAGGTCGTCGACCCGGACTACTACCGGA AGATCCTGTTCAAGATCTACTGGGACGACCAGGAGACGCCCAGCGTCATCGCCCCACTGGGGGACTTCTTCGGGTTGATG AACTCGCTGTCCGGCAGCTACGACTCACTGCCGCTCTCGGTCTCGGCCAAGGAGCCCGAGCTCCACACCTTCGGGGGCAG CGCTGCGTTCAACTCCTACTTCCGCATGCCGTTCGCGAAGCGGGCTCGCGTAGTGGTCGAGAACCAGAACGACATCCCGT ACCTCCAGTACTTCTACATCGACTACGAACTGTCCCCCACGGCCCTGCCGGAGGACACGGTGTACTTCCACGCGCACTGG CGGCGTGCCCTCCCAAACGTCGGCTGGGGGCCTGACCTGCAGACCAACAGCATCGAGACCACGATCCCGAACCTGACCGG TGCCGACAACTACGTCGCGCTCGAGACCGAGGGCCGTGGCCACTACGTCGGTTGCACCCTCGCGGTCCGGCACTTCCAGG GGTCCTGGTGGGGCGAAGGCGACGACATGATCTTCATCGACGACGACACGTGGCCGCCCAGCCTGCACGGCACCGGCATG GAGGACTACTTCGGCCACGCGTGGGGCATGCAGCGCAACGCCTACCAGTTCAACGGCACGATCGTCCACGAGGAAGACGT GCCCGGGTTCCACCACAGCTACCGGTTCCACATGGTCGACCCCATCCGGTTCGAGAAGCGCATCAAGGTCACCTTCGAGC ACGGGCACGGCAACCATCTCTCCGATGACTGGTCGTCGACCGCGTACTGGTACCAGACCCTCCCGTCGCCCGTGCTCGAG GTGCCGGACGTCGACGACCGGCTGCCCCTGCGACCGGTGAACCGCGTGATCGAGGCTCCGCTGCCCGAACTTAGCGACGA ACAGCGCACCGCTCGCGAGCGGGCCGACGAGCGGATGCGTCGCTTCGTAGAGGCACGGGACGCCTTGCGCGAGGAGCGCC GAGGCGAGGTGGACGACTGGGAACGCGGCAACGTGGACCAGGCGCGGGCCATCCGGCGTTCCTACGACGCGGAACGCGAG GGCAACTGA
Upstream 100 bases:
>100_bases GATCGTGGCCATAAAGGCTCCATTCAAACGTTTGTACGTCGCCCGCCAGTTGGCCCTTGCGTCGTCTTCCTGCTGTTCAA CATAGCGGGTTGGCCCGCCG
Downstream 100 bases:
>100_bases TGCGGCCCCTGGTCCACTTCACTGCAGACGCCGGCTGGATCAATGACCCCCACGGCCTGACCTTCCACCGCGGCCGGTAT CACCTGTTCCACCAGTACGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MRTASVEFYDGQARKRFDGNRAPWALERTIMSTDFRGGLLGELTLARPGRTARASSFDQTGRNRDNWIVMPGEERTLADL EGPGFITHIWMTQSCRIQPGPSQIDPAGVGVPMLEIHNALGVNWEVVDPDYYRKILFKIYWDDQETPSVIAPLGDFFGLM NSLSGSYDSLPLSVSAKEPELHTFGGSAAFNSYFRMPFAKRARVVVENQNDIPYLQYFYIDYELSPTALPEDTVYFHAHW RRALPNVGWGPDLQTNSIETTIPNLTGADNYVALETEGRGHYVGCTLAVRHFQGSWWGEGDDMIFIDDDTWPPSLHGTGM EDYFGHAWGMQRNAYQFNGTIVHEEDVPGFHHSYRFHMVDPIRFEKRIKVTFEHGHGNHLSDDWSSTAYWYQTLPSPVLE VPDVDDRLPLRPVNRVIEAPLPELSDEQRTARERADERMRRFVEARDALREERRGEVDDWERGNVDQARAIRRSYDAERE GN
Sequences:
>Translated_482_residues MRTASVEFYDGQARKRFDGNRAPWALERTIMSTDFRGGLLGELTLARPGRTARASSFDQTGRNRDNWIVMPGEERTLADL EGPGFITHIWMTQSCRIQPGPSQIDPAGVGVPMLEIHNALGVNWEVVDPDYYRKILFKIYWDDQETPSVIAPLGDFFGLM NSLSGSYDSLPLSVSAKEPELHTFGGSAAFNSYFRMPFAKRARVVVENQNDIPYLQYFYIDYELSPTALPEDTVYFHAHW RRALPNVGWGPDLQTNSIETTIPNLTGADNYVALETEGRGHYVGCTLAVRHFQGSWWGEGDDMIFIDDDTWPPSLHGTGM EDYFGHAWGMQRNAYQFNGTIVHEEDVPGFHHSYRFHMVDPIRFEKRIKVTFEHGHGNHLSDDWSSTAYWYQTLPSPVLE VPDVDDRLPLRPVNRVIEAPLPELSDEQRTARERADERMRRFVEARDALREERRGEVDDWERGNVDQARAIRRSYDAERE GN >Mature_482_residues MRTASVEFYDGQARKRFDGNRAPWALERTIMSTDFRGGLLGELTLARPGRTARASSFDQTGRNRDNWIVMPGEERTLADL EGPGFITHIWMTQSCRIQPGPSQIDPAGVGVPMLEIHNALGVNWEVVDPDYYRKILFKIYWDDQETPSVIAPLGDFFGLM NSLSGSYDSLPLSVSAKEPELHTFGGSAAFNSYFRMPFAKRARVVVENQNDIPYLQYFYIDYELSPTALPEDTVYFHAHW RRALPNVGWGPDLQTNSIETTIPNLTGADNYVALETEGRGHYVGCTLAVRHFQGSWWGEGDDMIFIDDDTWPPSLHGTGM EDYFGHAWGMQRNAYQFNGTIVHEEDVPGFHHSYRFHMVDPIRFEKRIKVTFEHGHGNHLSDDWSSTAYWYQTLPSPVLE VPDVDDRLPLRPVNRVIEAPLPELSDEQRTARERADERMRRFVEARDALREERRGEVDDWERGNVDQARAIRRSYDAERE GN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55270; Mature: 55270
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTASVEFYDGQARKRFDGNRAPWALERTIMSTDFRGGLLGELTLARPGRTARASSFDQT CCCCEEEEECCCCHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHC GRNRDNWIVMPGEERTLADLEGPGFITHIWMTQSCRIQPGPSQIDPAGVGVPMLEIHNAL CCCCCCEEEECCCCCEEECCCCCCEEEEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHH GVNWEVVDPDYYRKILFKIYWDDQETPSVIAPLGDFFGLMNSLSGSYDSLPLSVSAKEPE CCCEEEECHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC LHTFGGSAAFNSYFRMPFAKRARVVVENQNDIPYLQYFYIDYELSPTALPEDTVYFHAHW EEECCCCHHHHHHHCCCHHHCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEH RRALPNVGWGPDLQTNSIETTIPNLTGADNYVALETEGRGHYVGCTLAVRHFQGSWWGEG HHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCC DDMIFIDDDTWPPSLHGTGMEDYFGHAWGMQRNAYQFNGTIVHEEDVPGFHHSYRFHMVD CCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEEEECCCCCCCCCCEEEEEEC PIRFEKRIKVTFEHGHGNHLSDDWSSTAYWYQTLPSPVLEVPDVDDRLPLRPVNRVIEAP CEEECEEEEEEEECCCCCCCCCCCCCCEEEEHHCCCCCEECCCCCCCCCCHHHHHHHHCC LPELSDEQRTARERADERMRRFVEARDALREERRGEVDDWERGNVDQARAIRRSYDAERE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC GN CC >Mature Secondary Structure MRTASVEFYDGQARKRFDGNRAPWALERTIMSTDFRGGLLGELTLARPGRTARASSFDQT CCCCEEEEECCCCHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHC GRNRDNWIVMPGEERTLADLEGPGFITHIWMTQSCRIQPGPSQIDPAGVGVPMLEIHNAL CCCCCCEEEECCCCCEEECCCCCCEEEEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHH GVNWEVVDPDYYRKILFKIYWDDQETPSVIAPLGDFFGLMNSLSGSYDSLPLSVSAKEPE CCCEEEECHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC LHTFGGSAAFNSYFRMPFAKRARVVVENQNDIPYLQYFYIDYELSPTALPEDTVYFHAHW EEECCCCHHHHHHHCCCHHHCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEH RRALPNVGWGPDLQTNSIETTIPNLTGADNYVALETEGRGHYVGCTLAVRHFQGSWWGEG HHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCC DDMIFIDDDTWPPSLHGTGMEDYFGHAWGMQRNAYQFNGTIVHEEDVPGFHHSYRFHMVD CCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEEEECCCCCCCCCCEEEEEEC PIRFEKRIKVTFEHGHGNHLSDDWSSTAYWYQTLPSPVLEVPDVDDRLPLRPVNRVIEAP CEEECEEEEEEEECCCCCCCCCCCCCCEEEEHHCCCCCEECCCCCCCCCCHHHHHHHHCC LPELSDEQRTARERADERMRRFVEARDALREERRGEVDDWERGNVDQARAIRRSYDAERE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC GN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA