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The map label for this gene is recF

Identifier: 119714276

GI number: 119714276

Start: 4254

End: 5516

Strand: Direct

Name: recF

Synonym: Noca_0004

Alternate gene names: 119714276

Gene position: 4254-5516 (Clockwise)

Preceding gene: 119714275

Following gene: 119714277

Centisome position: 0.09

GC content: 73.79

Gene sequence:

>1263_bases
GTGTACGTCGCGCACCTCTCGCTCCACGACTTCCGGTCCTACGCCACGGCCGAGGTCGAGCTGTCCCCGGGCGTCACGGC
GTTCATCGGCCGCAACGGACAGGGCAAGACCAACCTCGTCGAGGCGATCGACTACCTCTCCCGGCTGAGCTCGCACCGCG
TCGCCAGCGACGCCCCGCTGGTGCGGGCCGGCGCGGACCAGGCCGTGGTGCGGGCCGCGGTCGTGCGCGACGGGCGTACG
GCGGTGCTCGAGGTCGAGCTCAACCCCGGCCGGTCGAACCGCGCCCGGGTGAACCGCTCCCCGCTCCCCCGGGCCCGCGA
TCTCGTGGGGCTGGTGCGCACGGTCGTGTTCTCCCCGGAGGACCTGACCCTGGTCAAGGGCGACCCGGCCGACCGGCGCC
GCTTCCTCGACGACCTGCTGGTGCTGCGCGTGCCCCGGCTCGCGGGAGTGCGTGCCGACTACGACCGGGTCCTGCGGCAG
CGCAACACGCTCCTCAAGACAGCACGCAAGGGGGGCTTCGCACGCAAGGGGGGCTTCGCACGCAAGGGGGGCTTCGCCCC
CCTTGGACCCCCCGAAGGACGCCCCGAGGGACCCCCCGAGGGACGCACGGGAGGCTCTGCTACCTCTGGGCCCCCCAGTC
GGTCGGTCGCCCTGGACACGCTTGCCGTGTGGGACGCGCACCTGGCCCGCACCGGTGCCGAGCTGTTGGCCGAGCGGCTC
GCCCTGGTGGAGGCGCTGCGGCCGTACGTCGGTAAGGCCTACGAGACCGTCGCACGTGGGGCCACCCGCGACGACGCCGA
GATCGACTACAAGCCGTCCTTCGACCTCGAGGGGCGCACTGGCCGCGACGACCTGGTCGAGGCGCTGCTCGCCGAGGTGG
AACGGCGTCGCGGTGACGAGCTCGACCGCGGGGTCTCGCTCGTCGGCCCGCACCGCGACGAGCTGCTGCTGACGCTCGGC
CACGGCAGTCCCGACAGCCGGCTCCCGGTGAAGGGCTACGCCTCGCACGGCGAGTCGTGGTCGTTCGCGCTCGCGTTGCG
GCTCGCGGCGTACGACCTGCTCCGCGCCGACGGTGACGACCCGATCCTGATCCTCGATGACGTCTTCGCCGAGCTGGACA
CCGAACGCCGCGCCCAGCTCGCCGACCTCGTGGCCGGCGCCGAGCAGGTGCTCGTCACGGCGGCCGTCGCGGCCGACGTC
CCGGCCGGCCTCGCCGGCGCCCGCTTCGCAGTCGGGAACGGCGAGGTCCTCCGTGAGCAGTGA

Upstream 100 bases:

>100_bases
GCGGTCGCCGCGATGCGCAACCAGTTCGGCGGGCACGCCGTACACACGGAGCCGCCGGTCGGCGGCGACGCCAACCCCGG
CTAGGCCGACCGAGCCACCT

Downstream 100 bases:

>100_bases
CGAGCCGCTCGGTTCGCAGCCCGCGGACCTGCCGGCGCCGGCAGGGGGGGCGGAGGCACCCGAGCACCACGACGACGGCC
TCGACCTGGCCAAGGCGCTG

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPLVRAGADQAVVRAAVVRDGRT
AVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPEDLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQ
RNTLLKTARKGGFARKGGFARKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL
ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERRRGDELDRGVSLVGPHRDELLLTLG
HGSPDSRLPVKGYASHGESWSFALALRLAAYDLLRADGDDPILILDDVFAELDTERRAQLADLVAGAEQVLVTAAVAADV
PAGLAGARFAVGNGEVLREQ

Sequences:

>Translated_420_residues
MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPLVRAGADQAVVRAAVVRDGRT
AVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPEDLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQ
RNTLLKTARKGGFARKGGFARKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL
ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERRRGDELDRGVSLVGPHRDELLLTLG
HGSPDSRLPVKGYASHGESWSFALALRLAAYDLLRADGDDPILILDDVFAELDTERRAQLADLVAGAEQVLVTAAVAADV
PAGLAGARFAVGNGEVLREQ
>Mature_420_residues
MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPLVRAGADQAVVRAAVVRDGRT
AVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPEDLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQ
RNTLLKTARKGGFARKGGFARKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL
ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERRRGDELDRGVSLVGPHRDELLLTLG
HGSPDSRLPVKGYASHGESWSFALALRLAAYDLLRADGDDPILILDDVFAELDTERRAQLADLVAGAEQVLVTAAVAADV
PAGLAGARFAVGNGEVLREQ

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

Organism=Escherichia coli, GI1790135, Length=404, Percent_Identity=25.4950495049505, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_NOCSJ (A1SCL9)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_921241.1
- ProteinModelPortal:   A1SCL9
- SMR:   A1SCL9
- STRING:   A1SCL9
- GeneID:   4598355
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_0004
- eggNOG:   COG1195
- HOGENOM:   HBG645124
- OMA:   NDAPLVR
- PhylomeDB:   A1SCL9
- ProtClustDB:   PRK00064
- BioCyc:   NSP35761:NOCA_0004-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 45171; Mature: 45171

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPL
CEEEEEEHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
VRAGADQAVVRAAVVRDGRTAVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPE
EECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
DLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARKGGFA
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERRRGDE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
LDRGVSLVGPHRDELLLTLGHGSPDSRLPVKGYASHGESWSFALALRLAAYDLLRADGDD
HHCCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PILILDDVFAELDTERRAQLADLVAGAEQVLVTAAVAADVPAGLAGARFAVGNGEVLREQ
CEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPL
CEEEEEEHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
VRAGADQAVVRAAVVRDGRTAVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPE
EECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
DLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARKGGFA
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERRRGDE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
LDRGVSLVGPHRDELLLTLGHGSPDSRLPVKGYASHGESWSFALALRLAAYDLLRADGDD
HHCCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PILILDDVFAELDTERRAQLADLVAGAEQVLVTAAVAADVPAGLAGARFAVGNGEVLREQ
CEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA