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The map label for this gene is smf [H]

Identifier: 119387028

GI number: 119387028

Start: 1501919

End: 1503175

Strand: Direct

Name: smf [H]

Synonym: Pden_4323

Alternate gene names: 119387028

Gene position: 1501919-1503175 (Clockwise)

Preceding gene: 119387027

Following gene: 119387029

Centisome position: 86.81

GC content: 71.6

Gene sequence:

>1257_bases
ATGGACACGATGGCAAGGCTGCTTTCTTCGGATCCCCAGTATACCCCTCCCGGGCCTAAGGGGGACGGGCTTGCCATCCT
GCGCCTCATCCGCTCGCGCAGGGTCGGGCCGGCGACCTTCCACCGGCTGCTGGACGAGCATGGCAGCGCCGAAGCGGCAT
TGGCCGCCCTGCCGGCCATCGCCCGCGCCGCAGGGGTCGAGGATTACGCCCCCTGCCCCAGAGCCGCGGCCGAGGCCGAG
ATCGCGGCCGGCCATCGCGCCGGCGCCCGACTTCTGACCTGGGGCGACCCGGACTATCCCGCTCTGCTGCGCGAGGTGGC
CGATGCGCCTGCGGTGCTGTGGCTGCGCGGCGACATATCGGTTCTGGCGCGCATGCCGGTGGCGGTGATCGGTGCGCGCA
ACGCCTCGTCGCTGGGCTTGCGCATGGCGCGCGGCATGGCCTCGGGCCTGTCGCAATCGGGCGCGGCGGTCGTCGCGGGC
CTCGCGCGCGGCATCGACACCATCGCGCATGAAGCCGCGCTGCATGGCGGCACCATCGCGGTCATGGCCGGCGGCATCGA
CAAGATCTATCCCGGCGAGAATGCGGCCCTGGCCGAAGAAATCTGCGAAACCGGCCTGCTCGTTACCGAACAGCCGCCGG
GAACCGAGCCCGTGGCCCGGCATTTCCCCGCCCGCAACCGCATCATCTCGGGCCTGTCGCGCGCCGTGGTGGTGGTCGAG
GCTGCATATCGTTCCGGCAGTCTGATCACCGCGCGCTGCGGGCTGGACCAGGGGCGCGAGGTGATGGCGGTGCCGGGCCA
TCCGATGGATGCGCGGGCCGGCGGCTGCAACGCGCTGATCCGCGACGGCGCGACCCTGGTGCGCAATTCGGCCGATGTGC
TGGCGGCGCTGCAATCGAACGACCCCATAGCCGCGAAGCAGGCACCGGCGGAAAACCCGGTCGAGGCCACCCCCGCCGCG
GTGGCAGCGATGCCCGTACAGGTCCGACAACCAGCCGCGGTCGCCCGCCGGCTTGCGGAACTGGGTCACGGCATCCACCA
CAGGCCGATGATGGGCAGGCCGCGCGACGCGGGCGGTCCGGTGAACCTGGAAGGACGGATCCTGGCCCGGCTGGGCCCCA
GCCCGACCGAGGAAAACATGCTGATCCGCGATCTCGGGGTGCCGGCAGCCGTCCTCGCGCCTGCCATCCTGGCGCTGGAA
CTGTCCGGTCGGGTGCAGCGCATCGCCGGCGGCAAGCTGGCGCTGAACGGCGGTTAA

Upstream 100 bases:

>100_bases
TGAATCGCTTGTATTCCAATATCTTGAAGGATTCCTTGGGCCGCTAACCCATTCTTAACCATTGCCATGCCATGACTCGG
CCTGCGGATGAGGCAAAGGC

Downstream 100 bases:

>100_bases
GGGCCGAGTTGGGACCGATCCAGCCGCTTCTGCCCCCGAGCCGCGCGGGATGGACGACCGGCGCTATCGCCAACAGGGCT
TTGCCGACCGCTTTTTCAGC

Product: DNA protecting protein DprA

Products: NA

Alternate protein names: DNA-processing chain A [H]

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MDTMARLLSSDPQYTPPGPKGDGLAILRLIRSRRVGPATFHRLLDEHGSAEAALAALPAIARAAGVEDYAPCPRAAAEAE
IAAGHRAGARLLTWGDPDYPALLREVADAPAVLWLRGDISVLARMPVAVIGARNASSLGLRMARGMASGLSQSGAAVVAG
LARGIDTIAHEAALHGGTIAVMAGGIDKIYPGENAALAEEICETGLLVTEQPPGTEPVARHFPARNRIISGLSRAVVVVE
AAYRSGSLITARCGLDQGREVMAVPGHPMDARAGGCNALIRDGATLVRNSADVLAALQSNDPIAAKQAPAENPVEATPAA
VAAMPVQVRQPAAVARRLAELGHGIHHRPMMGRPRDAGGPVNLEGRILARLGPSPTEENMLIRDLGVPAAVLAPAILALE
LSGRVQRIAGGKLALNGG

Sequences:

>Translated_418_residues
MDTMARLLSSDPQYTPPGPKGDGLAILRLIRSRRVGPATFHRLLDEHGSAEAALAALPAIARAAGVEDYAPCPRAAAEAE
IAAGHRAGARLLTWGDPDYPALLREVADAPAVLWLRGDISVLARMPVAVIGARNASSLGLRMARGMASGLSQSGAAVVAG
LARGIDTIAHEAALHGGTIAVMAGGIDKIYPGENAALAEEICETGLLVTEQPPGTEPVARHFPARNRIISGLSRAVVVVE
AAYRSGSLITARCGLDQGREVMAVPGHPMDARAGGCNALIRDGATLVRNSADVLAALQSNDPIAAKQAPAENPVEATPAA
VAAMPVQVRQPAAVARRLAELGHGIHHRPMMGRPRDAGGPVNLEGRILARLGPSPTEENMLIRDLGVPAAVLAPAILALE
LSGRVQRIAGGKLALNGG
>Mature_418_residues
MDTMARLLSSDPQYTPPGPKGDGLAILRLIRSRRVGPATFHRLLDEHGSAEAALAALPAIARAAGVEDYAPCPRAAAEAE
IAAGHRAGARLLTWGDPDYPALLREVADAPAVLWLRGDISVLARMPVAVIGARNASSLGLRMARGMASGLSQSGAAVVAG
LARGIDTIAHEAALHGGTIAVMAGGIDKIYPGENAALAEEICETGLLVTEQPPGTEPVARHFPARNRIISGLSRAVVVVE
AAYRSGSLITARCGLDQGREVMAVPGHPMDARAGGCNALIRDGATLVRNSADVLAALQSNDPIAAKQAPAENPVEATPAA
VAAMPVQVRQPAAVARRLAELGHGIHHRPMMGRPRDAGGPVNLEGRILARLGPSPTEENMLIRDLGVPAAVLAPAILALE
LSGRVQRIAGGKLALNGG

Specific function: Essential for efficient chromosomal DNA transformation but not required for plasmid transformation [H]

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=235, Percent_Identity=41.2765957446808, Blast_Score=164, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 43029; Mature: 43029

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTMARLLSSDPQYTPPGPKGDGLAILRLIRSRRVGPATFHRLLDEHGSAEAALAALPAI
CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
ARAAGVEDYAPCPRAAAEAEIAAGHRAGARLLTWGDPDYPALLREVADAPAVLWLRGDIS
HHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
VLARMPVAVIGARNASSLGLRMARGMASGLSQSGAAVVAGLARGIDTIAHEAALHGGTIA
HHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
VMAGGIDKIYPGENAALAEEICETGLLVTEQPPGTEPVARHFPARNRIISGLSRAVVVVE
EEECCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCHHHHHCCHHHHHHHHHHHHEEEEE
AAYRSGSLITARCGLDQGREVMAVPGHPMDARAGGCNALIRDGATLVRNSADVLAALQSN
EHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHCCHHHHHCCHHHHHHHCCC
DPIAAKQAPAENPVEATPAAVAAMPVQVRQPAAVARRLAELGHGIHHRPMMGRPRDAGGP
CCCCCCCCCCCCCCCCCCHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VNLEGRILARLGPSPTEENMLIRDLGVPAAVLAPAILALELSGRVQRIAGGKLALNGG
CCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHCCCEEEECCC
>Mature Secondary Structure
MDTMARLLSSDPQYTPPGPKGDGLAILRLIRSRRVGPATFHRLLDEHGSAEAALAALPAI
CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
ARAAGVEDYAPCPRAAAEAEIAAGHRAGARLLTWGDPDYPALLREVADAPAVLWLRGDIS
HHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
VLARMPVAVIGARNASSLGLRMARGMASGLSQSGAAVVAGLARGIDTIAHEAALHGGTIA
HHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
VMAGGIDKIYPGENAALAEEICETGLLVTEQPPGTEPVARHFPARNRIISGLSRAVVVVE
EEECCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCHHHHHCCHHHHHHHHHHHHEEEEE
AAYRSGSLITARCGLDQGREVMAVPGHPMDARAGGCNALIRDGATLVRNSADVLAALQSN
EHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHCCHHHHHCCHHHHHHHCCC
DPIAAKQAPAENPVEATPAAVAAMPVQVRQPAAVARRLAELGHGIHHRPMMGRPRDAGGP
CCCCCCCCCCCCCCCCCCHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VNLEGRILARLGPSPTEENMLIRDLGVPAAVLAPAILALELSGRVQRIAGGKLALNGG
CCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7768823; 7542800 [H]