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The map label for this gene is yhbU [H]

Identifier: 119386933

GI number: 119386933

Start: 1389849

End: 1390844

Strand: Direct

Name: yhbU [H]

Synonym: Pden_4228

Alternate gene names: 119386933

Gene position: 1389849-1390844 (Clockwise)

Preceding gene: 119386932

Following gene: 119386934

Centisome position: 80.33

GC content: 69.08

Gene sequence:

>996_bases
ATGATGGAGCTGGTCTGCCCGGCCGGAACCCCGGCGGCGCTGCGCGCGGCGGTCGATGCGGGCGCGCATACGGTCTATTG
CGGCTTTGCCGACGAAACCAATGCCCGCAACTTTCCCGGGCTGAACTTCAGCCGCGAGGAACTGGCCGAGGGCGTGGCCT
ATGCCCATGCGCGCGGCGCCAAGGTGCTGGTGGCGATCAACACCTTCCCGCGCGCCGGAGACCAGGTGCTGTGGCACCGC
GCCGTCCGCGACGCCGCCGATCTGGGCGCAGATGCGGTGATCCTGGCCGACCTGGGCCTGATCGCCCATGCCGCCGAGGC
CCATCCCGGCCTGCGGCTGCACCTGTCTGTGCAGGCCGCCGCCGCCAATCCCGACGCGATCAACTTCTATGCCGAGGCTT
TCGGCATCCGCCGCGTCGTCCTGCCGCGCGTGCTGTCGGTCGAGGAGATCACCGCCATCAATCGCGAGATCGACGTGGAA
ACCGAGGTTTTCGTCTTCGGCGGGCTTTGCGTCATGGCCGAGGGACGCTGTTCGCTGTCCTCCTATGCGACCGGGCTTTC
GCCTAACATGAACGGCGTCTGCTCGCCCGCAAGCCATGTCGCCTATGCCGATGTGGCCGGCAATCACGAGGCGCGGCTGG
GCGATTTCCTGATCCACCGCACGCCCAAGGGCATGCCTGTGCCCTATCCGACGCTGTGCAAGGGCTGCTTCACCTCGCCC
GACGGCAAGGGGGACAGCCAGACCGGCCATATCTTCGAGGACCCGGTCAGCCTGGACGCGACCCGCCTGATCCCGGCGCT
GCAAAAGGCCGGGGTCAGCGCCCTGAAGATCGAGGGGCGGCAACGCTCGCGCGCCTATGTGGCGCAGGTGGTGCGCGCCT
TCCGCGCCGCCGTCGAGGCCGCCGACCAGGGCGCCCCGATGCCCGAGGGACTGCTTGCGCGGCTGACCGAGGGCCAGGCC
GCAACCACCGGCGCCTATGCCAAGACCTGGAGATGA

Upstream 100 bases:

>100_bases
CGGGGCTGTCCGGCCGGCCGCTGGACCGCTGGCTGCGCCGCGGCTCGGCATTGGTGGCGCGCAAGAGCGGCCTGATTCTG
TCCCGACAAGAGGTGATGCC

Downstream 100 bases:

>100_bases
CCATGGACCTGACCGTCGGCCCCATCGCCTTTTTCTGGAGCGCGGAGCAGGTCCGCGCCTTCTACCGGACTTTGGCCGAC
ACCCCCGTTCAGCGGGTGGT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MMELVCPAGTPAALRAAVDAGAHTVYCGFADETNARNFPGLNFSREELAEGVAYAHARGAKVLVAINTFPRAGDQVLWHR
AVRDAADLGADAVILADLGLIAHAAEAHPGLRLHLSVQAAAANPDAINFYAEAFGIRRVVLPRVLSVEEITAINREIDVE
TEVFVFGGLCVMAEGRCSLSSYATGLSPNMNGVCSPASHVAYADVAGNHEARLGDFLIHRTPKGMPVPYPTLCKGCFTSP
DGKGDSQTGHIFEDPVSLDATRLIPALQKAGVSALKIEGRQRSRAYVAQVVRAFRAAVEAADQGAPMPEGLLARLTEGQA
ATTGAYAKTWR

Sequences:

>Translated_331_residues
MMELVCPAGTPAALRAAVDAGAHTVYCGFADETNARNFPGLNFSREELAEGVAYAHARGAKVLVAINTFPRAGDQVLWHR
AVRDAADLGADAVILADLGLIAHAAEAHPGLRLHLSVQAAAANPDAINFYAEAFGIRRVVLPRVLSVEEITAINREIDVE
TEVFVFGGLCVMAEGRCSLSSYATGLSPNMNGVCSPASHVAYADVAGNHEARLGDFLIHRTPKGMPVPYPTLCKGCFTSP
DGKGDSQTGHIFEDPVSLDATRLIPALQKAGVSALKIEGRQRSRAYVAQVVRAFRAAVEAADQGAPMPEGLLARLTEGQA
ATTGAYAKTWR
>Mature_331_residues
MMELVCPAGTPAALRAAVDAGAHTVYCGFADETNARNFPGLNFSREELAEGVAYAHARGAKVLVAINTFPRAGDQVLWHR
AVRDAADLGADAVILADLGLIAHAAEAHPGLRLHLSVQAAAANPDAINFYAEAFGIRRVVLPRVLSVEEITAINREIDVE
TEVFVFGGLCVMAEGRCSLSSYATGLSPNMNGVCSPASHVAYADVAGNHEARLGDFLIHRTPKGMPVPYPTLCKGCFTSP
DGKGDSQTGHIFEDPVSLDATRLIPALQKAGVSALKIEGRQRSRAYVAQVVRAFRAAVEAADQGAPMPEGLLARLTEGQA
ATTGAYAKTWR

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=336, Percent_Identity=46.7261904761905, Blast_Score=301, Evalue=3e-83,
Organism=Escherichia coli, GI1788397, Length=328, Percent_Identity=34.4512195121951, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081910, Length=321, Percent_Identity=30.2180685358255, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 34957; Mature: 34957

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMELVCPAGTPAALRAAVDAGAHTVYCGFADETNARNFPGLNFSREELAEGVAYAHARGA
CCEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
KVLVAINTFPRAGDQVLWHRAVRDAADLGADAVILADLGLIAHAAEAHPGLRLHLSVQAA
EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEEEEEEE
AANPDAINFYAEAFGIRRVVLPRVLSVEEITAINREIDVETEVFVFGGLCVMAEGRCSLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCHH
SYATGLSPNMNGVCSPASHVAYADVAGNHEARLGDFLIHRTPKGMPVPYPTLCKGCFTSP
HHHCCCCCCCCCCCCCHHCEEEEECCCCCCHHHHHHHEECCCCCCCCCCHHHHHHCCCCC
DGKGDSQTGHIFEDPVSLDATRLIPALQKAGVSALKIEGRQRSRAYVAQVVRAFRAAVEA
CCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
ADQGAPMPEGLLARLTEGQAATTGAYAKTWR
HHCCCCCCHHHHHHHCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MMELVCPAGTPAALRAAVDAGAHTVYCGFADETNARNFPGLNFSREELAEGVAYAHARGA
CCEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
KVLVAINTFPRAGDQVLWHRAVRDAADLGADAVILADLGLIAHAAEAHPGLRLHLSVQAA
EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEEEEEEE
AANPDAINFYAEAFGIRRVVLPRVLSVEEITAINREIDVETEVFVFGGLCVMAEGRCSLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCHH
SYATGLSPNMNGVCSPASHVAYADVAGNHEARLGDFLIHRTPKGMPVPYPTLCKGCFTSP
HHHCCCCCCCCCCCCCHHCEEEEECCCCCCHHHHHHHEECCCCCCCCCCHHHHHHCCCCC
DGKGDSQTGHIFEDPVSLDATRLIPALQKAGVSALKIEGRQRSRAYVAQVVRAFRAAVEA
CCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
ADQGAPMPEGLLARLTEGQAATTGAYAKTWR
HHCCCCCCHHHHHHHCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]