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The map label for this gene is lsrR [H]

Identifier: 119386879

GI number: 119386879

Start: 1330301

End: 1331233

Strand: Direct

Name: lsrR [H]

Synonym: Pden_4174

Alternate gene names: 119386879

Gene position: 1330301-1331233 (Clockwise)

Preceding gene: 119386870

Following gene: 119386891

Centisome position: 76.89

GC content: 70.2

Gene sequence:

>933_bases
ATGTCGAACCAGGGCCGGAAACTGGAACAGGCGGCCAAGGCGGCGTGGCTCTCTTACGTCGCGGGCAAGACCCAGGACGA
GATCGCGGGGATCATGGGCATCTCGCGCCAGACCGCGCAGCGCCTGGTCGCGCAGGCCATGGCCGAGGGCATCGTCAAGA
TCCGCATCGACCATCCCTTTGCCCATTGCATGGACCTTGCCGCCGAATTGCAGCGCAAATACCGGCTGGATTTCTGCCAG
ATCGCGCCCTCGGACGCACCCGAGGCCGGGGTGGCCCTGATGCTGGCCGACGTGATCGAGCAATGGCTGCGCCGGGCCGA
GCCGATGACCATGGCGATCGGCACCGGCCGCACCCTGCGCAGCGCCATCGCGCAATTGCCGCATATCGACTGCCCGCAGC
ACCGCATCGTCTCGCTGACCGGCAATATCGCGCCGGACGGCTCGACTGCCTATTACAACGTGCTGTTCACGCTTTCGGAC
CTGGTCAGCGCGCGCAGCTTTCCCCTGCCGCTGCCGGTCATCGCCCCCAGCGTGCGCGAACGGCAGGCAGTCAACAGCCA
GCCCAGCATCGAGCGGCTGATCCGCATGTCCGCCGGGGCCGCGGTCGCCTTCGTCGGCATCGGCACGGTGGGCGCGCAGG
CTCCGCTGATGCTGGACGGGTTCCTGTCGCAGCCCGACCTGGACGCGCTGGTCGCGGCCGGCGCGGTGGGCGAGATCACC
GGCTGGGCCTACGACGCGCGGGGCGCGCTGGTGGCGGGGCTCAGCAACGACCGCGTGGCCTCGGCACCGATCCCGCCGCG
CGAGACGACGCTGGTGATCGGCGCGGCCCATGGCGCCGAAAAGGTGCCGGCGATCCGCGGCGCGCTGCGCGGCGGGCTGA
TCAGCGGGCTGATCACCGATGCCGCGACCGGGGCCGCATTGCTGGCCGATTGA

Upstream 100 bases:

>100_bases
GGGATGCGCGGGGTGCGCGCTGGACAGCCCGGTCGCCGGCAAGCTACACAGGGACGGCAAAAGCGACCCGAAACAGCGCG
AAAGACGGAAAAGCCAACCC

Downstream 100 bases:

>100_bases
TCGCTACATCGCCGCGATCTCGGCGCGCTGCTGCTGCATGCGCAGAAAGATGCGCCAGTCCCGCTCGCGCCGGGCACGGG
CGGCGGGGTCGGGGCGGGTC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSNQGRKLEQAAKAAWLSYVAGKTQDEIAGIMGISRQTAQRLVAQAMAEGIVKIRIDHPFAHCMDLAAELQRKYRLDFCQ
IAPSDAPEAGVALMLADVIEQWLRRAEPMTMAIGTGRTLRSAIAQLPHIDCPQHRIVSLTGNIAPDGSTAYYNVLFTLSD
LVSARSFPLPLPVIAPSVRERQAVNSQPSIERLIRMSAGAAVAFVGIGTVGAQAPLMLDGFLSQPDLDALVAAGAVGEIT
GWAYDARGALVAGLSNDRVASAPIPPRETTLVIGAAHGAEKVPAIRGALRGGLISGLITDAATGAALLAD

Sequences:

>Translated_310_residues
MSNQGRKLEQAAKAAWLSYVAGKTQDEIAGIMGISRQTAQRLVAQAMAEGIVKIRIDHPFAHCMDLAAELQRKYRLDFCQ
IAPSDAPEAGVALMLADVIEQWLRRAEPMTMAIGTGRTLRSAIAQLPHIDCPQHRIVSLTGNIAPDGSTAYYNVLFTLSD
LVSARSFPLPLPVIAPSVRERQAVNSQPSIERLIRMSAGAAVAFVGIGTVGAQAPLMLDGFLSQPDLDALVAAGAVGEIT
GWAYDARGALVAGLSNDRVASAPIPPRETTLVIGAAHGAEKVPAIRGALRGGLISGLITDAATGAALLAD
>Mature_309_residues
SNQGRKLEQAAKAAWLSYVAGKTQDEIAGIMGISRQTAQRLVAQAMAEGIVKIRIDHPFAHCMDLAAELQRKYRLDFCQI
APSDAPEAGVALMLADVIEQWLRRAEPMTMAIGTGRTLRSAIAQLPHIDCPQHRIVSLTGNIAPDGSTAYYNVLFTLSDL
VSARSFPLPLPVIAPSVRERQAVNSQPSIERLIRMSAGAAVAFVGIGTVGAQAPLMLDGFLSQPDLDALVAAGAVGEITG
WAYDARGALVAGLSNDRVASAPIPPRETTLVIGAAHGAEKVPAIRGALRGGLISGLITDAATGAALLAD

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=318, Percent_Identity=30.188679245283, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87082414, Length=308, Percent_Identity=25.974025974026, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 32516; Mature: 32385

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQGRKLEQAAKAAWLSYVAGKTQDEIAGIMGISRQTAQRLVAQAMAEGIVKIRIDHPF
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCH
AHCMDLAAELQRKYRLDFCQIAPSDAPEAGVALMLADVIEQWLRRAEPMTMAIGTGRTLR
HHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
SAIAQLPHIDCPQHRIVSLTGNIAPDGSTAYYNVLFTLSDLVSARSFPLPLPVIAPSVRE
HHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
RQAVNSQPSIERLIRMSAGAAVAFVGIGTVGAQAPLMLDGFLSQPDLDALVAAGAVGEIT
HHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHCCCHHHHC
GWAYDARGALVAGLSNDRVASAPIPPRETTLVIGAAHGAEKVPAIRGALRGGLISGLITD
CCEECCCCEEEECCCCCCEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
AATGAALLAD
HCCCCCCCCC
>Mature Secondary Structure 
SNQGRKLEQAAKAAWLSYVAGKTQDEIAGIMGISRQTAQRLVAQAMAEGIVKIRIDHPF
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCH
AHCMDLAAELQRKYRLDFCQIAPSDAPEAGVALMLADVIEQWLRRAEPMTMAIGTGRTLR
HHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
SAIAQLPHIDCPQHRIVSLTGNIAPDGSTAYYNVLFTLSDLVSARSFPLPLPVIAPSVRE
HHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
RQAVNSQPSIERLIRMSAGAAVAFVGIGTVGAQAPLMLDGFLSQPDLDALVAAGAVGEIT
HHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHCCCHHHHC
GWAYDARGALVAGLSNDRVASAPIPPRETTLVIGAAHGAEKVPAIRGALRGGLISGLITD
CCEECCCCEEEECCCCCCEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
AATGAALLAD
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA