Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

Click here to switch to the map view.

The map label for this gene is 119386868

Identifier: 119386868

GI number: 119386868

Start: 1320373

End: 1321368

Strand: Direct

Name: 119386868

Synonym: Pden_4163

Alternate gene names: NA

Gene position: 1320373-1321368 (Clockwise)

Preceding gene: 119386867

Following gene: 119386870

Centisome position: 76.32

GC content: 61.55

Gene sequence:

>996_bases
ATGCGCTTTCTGCAGGACGACCCGGCCGGGATTCGCATTGTCCTGGCCGCGGATGCGGAAAACCGTCGCCCCGATCTTCC
CGCCGATCACCTGCCGATCACGCCCGATACGCTTCTGGAATGGCAGATGAACGGCAGCTATACCCATGCCATCCAGGCCC
ATGCGCTGCACCATGCCGTCCGGCATTTCGACGCGCCGACGATCCTGATCGACAGCGATACCGTTTTCCACGCCCACCCC
AAGCACCTGTTCGACCGGATAGGGCCGGGCAAGACCCTGATGCATGCCCGCGAAGGAATATTGCGGGACAGCCCGGAATG
GCCGGAATGGGAAAGCCTGATCCGCAATACCGGCGGCGTATTGGCAGGCTGGCCGGTCGACCGGAATACGGTCATGCACA
ATGCCGGCGTTCTGGGCCTGCACCCCAGCGACGCCGCGCTCATGGAGCGCGTAAAGGCCGCGATGCAGGAAATCCGCGCA
CAAAGCTCGGTGTTCACGGCCGTGCAACTGGCCGCGTCGCTGGGTTTCGGCAATGAGACGGAACTGTCGGATTGCGACGA
CCTGGTCGAGCATTATTGGAACGGGCCGCGGGCCTATTACCACTATCAGATCAAGCGCATGTTTCCGAAAATCCTGCAAG
GCGGCGGGATAGAGGGAATGAACATGCCGCTTGCACCGCTGGAAAGAAACCCGCCCTGCCGGATGGGAAACCGCATTGCC
GCGCGAATCAAGCGGATGCGGCGGGGCGGCGATGGCGAATATGCCTATGCCTATCTGGCCTATCTCAATGCGCTGTCGCT
GCGCAGAAGCGATATGGACATGGCGAATGTGTGGGCGGTCACGGCATTGGACATGCTGTCATGGGGCGTATCGCGCCAAC
ACCAGGAAATCACTACGGATTTCTCGCATTTCTCTCCGGCAGGCCTGGACGCGCAAGACTGGATGCAACCCACCTTGCGC
CGGCGTTGGCATGATTACTGGGCGGCGCGGACATGA

Upstream 100 bases:

>100_bases
TCAGAGCAGGGGGAGCGGGTCTTTGAAAATCCTTCTTTTCCAGATCTACGGAAATCAGCGCGCCTATCATCTTGAACTGA
CCTACTGCGTCCTTTCCGCC

Downstream 100 bases:

>100_bases
CCTGAAAAGGCGGGGCTAGACCTTTTCGCCATTCGCCCGGTCGAAGCGCGACTGGGCGGTATGGATCGCGTCGATATTCG
CCATCGCCCATTCCGCAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MRFLQDDPAGIRIVLAADAENRRPDLPADHLPITPDTLLEWQMNGSYTHAIQAHALHHAVRHFDAPTILIDSDTVFHAHP
KHLFDRIGPGKTLMHAREGILRDSPEWPEWESLIRNTGGVLAGWPVDRNTVMHNAGVLGLHPSDAALMERVKAAMQEIRA
QSSVFTAVQLAASLGFGNETELSDCDDLVEHYWNGPRAYYHYQIKRMFPKILQGGGIEGMNMPLAPLERNPPCRMGNRIA
ARIKRMRRGGDGEYAYAYLAYLNALSLRRSDMDMANVWAVTALDMLSWGVSRQHQEITTDFSHFSPAGLDAQDWMQPTLR
RRWHDYWAART

Sequences:

>Translated_331_residues
MRFLQDDPAGIRIVLAADAENRRPDLPADHLPITPDTLLEWQMNGSYTHAIQAHALHHAVRHFDAPTILIDSDTVFHAHP
KHLFDRIGPGKTLMHAREGILRDSPEWPEWESLIRNTGGVLAGWPVDRNTVMHNAGVLGLHPSDAALMERVKAAMQEIRA
QSSVFTAVQLAASLGFGNETELSDCDDLVEHYWNGPRAYYHYQIKRMFPKILQGGGIEGMNMPLAPLERNPPCRMGNRIA
ARIKRMRRGGDGEYAYAYLAYLNALSLRRSDMDMANVWAVTALDMLSWGVSRQHQEITTDFSHFSPAGLDAQDWMQPTLR
RRWHDYWAART
>Mature_331_residues
MRFLQDDPAGIRIVLAADAENRRPDLPADHLPITPDTLLEWQMNGSYTHAIQAHALHHAVRHFDAPTILIDSDTVFHAHP
KHLFDRIGPGKTLMHAREGILRDSPEWPEWESLIRNTGGVLAGWPVDRNTVMHNAGVLGLHPSDAALMERVKAAMQEIRA
QSSVFTAVQLAASLGFGNETELSDCDDLVEHYWNGPRAYYHYQIKRMFPKILQGGGIEGMNMPLAPLERNPPCRMGNRIA
ARIKRMRRGGDGEYAYAYLAYLNALSLRRSDMDMANVWAVTALDMLSWGVSRQHQEITTDFSHFSPAGLDAQDWMQPTLR
RRWHDYWAART

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37504; Mature: 37504

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLQDDPAGIRIVLAADAENRRPDLPADHLPITPDTLLEWQMNGSYTHAIQAHALHHAV
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHEEEEECCCCHHHHHHHHHHHHH
RHFDAPTILIDSDTVFHAHPKHLFDRIGPGKTLMHAREGILRDSPEWPEWESLIRNTGGV
HHCCCCEEEECCCCEEECCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCE
LAGWPVDRNTVMHNAGVLGLHPSDAALMERVKAAMQEIRAQSSVFTAVQLAASLGFGNET
EECCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ELSDCDDLVEHYWNGPRAYYHYQIKRMFPKILQGGGIEGMNMPLAPLERNPPCRMGNRIA
CCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
ARIKRMRRGGDGEYAYAYLAYLNALSLRRSDMDMANVWAVTALDMLSWGVSRQHQEITTD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
FSHFSPAGLDAQDWMQPTLRRRWHDYWAART
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFLQDDPAGIRIVLAADAENRRPDLPADHLPITPDTLLEWQMNGSYTHAIQAHALHHAV
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHEEEEECCCCHHHHHHHHHHHHH
RHFDAPTILIDSDTVFHAHPKHLFDRIGPGKTLMHAREGILRDSPEWPEWESLIRNTGGV
HHCCCCEEEECCCCEEECCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCE
LAGWPVDRNTVMHNAGVLGLHPSDAALMERVKAAMQEIRAQSSVFTAVQLAASLGFGNET
EECCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ELSDCDDLVEHYWNGPRAYYHYQIKRMFPKILQGGGIEGMNMPLAPLERNPPCRMGNRIA
CCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
ARIKRMRRGGDGEYAYAYLAYLNALSLRRSDMDMANVWAVTALDMLSWGVSRQHQEITTD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
FSHFSPAGLDAQDWMQPTLRRRWHDYWAART
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA