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The map label for this gene is sufD [H]

Identifier: 119386674

GI number: 119386674

Start: 1105008

End: 1106354

Strand: Direct

Name: sufD [H]

Synonym: Pden_3967

Alternate gene names: 119386674

Gene position: 1105008-1106354 (Clockwise)

Preceding gene: 119386673

Following gene: 119386675

Centisome position: 63.87

GC content: 68.0

Gene sequence:

>1347_bases
ATGGCGGATACGGCTGTTCTTGCCGCGCAAGTGCCTGCGGTCGAGGGCAAGGTCCGCCCCGGAGATGCGGCGCTGGCCGC
ACGCCTGGATGCCCTGGACCTGCCGCGCGGCGGCTTTACCCGCGCCGCGCGCGAGGATGCGGCGCAGCGGCTGCAAGCCA
TGGGCCTGCCCGGTGCACGTGACGAATACTGGCGCTATACCGATCCGGCGCCCTTCAACGCCGCCCGGCCCGAGCCGGTC
GAATTCGGCGCCGATGCCTCGACCCTGTTCACCGGGATCGAGCGGCTGAACCTGGTCTTCGTGGACGGCCGTTTCGACGC
CGCCGCCTCGGATGTGCTGGATGTCGAGGGCGTGGAGATCGAAAGCCTCGCCGCTGCCGAAGCCGCCGCAGACCATTGGG
CGGCCGGGCTTTACGGCCGGCTGGAAACCGCCGGGCAGGTGCCGGTCAAGCGTCCCTTTGCCGTGCTGAATACCCTGGCC
GCGGCCGAGGGCGTGCTGATCCGCGTCACCGGCAAGGTCGAGCGGCCGGTCCATATCACCTATCGCCGCTCGGCGCCCGA
TGCAGACGTGTATCTGCATCACGTCGTCAAGCTGGAGGAGGGGGCCGAGCTGACGCTGCTGGAAAGTGGCGCAATCGGTG
CGCGGTCGAACGTGGTGATCGAGGCCGACCTGGGCCGCGGCGCCCGCTTCCACCATATCAGCGCCAAGCGCGCCAACGAT
CCCAAGCTGGGGCTGGGCCATATCTTCGCCCGCGTCGCGGCCGAGGCGTTGTTCAAGTCCTTCTCGCTGTCGGTCAACGG
CTCGATGATGCGCAACGAAGCGGTGATCGAGATCGCCGGCGACGATGCCGTGGCCCATATCGCCGCCGCGGTGCTGGGCG
ATGGCGACACCGGCCGCTTCCACCACGACGACACCGTTTTCGTCACCCATGCCGCCGAGCGTTGCGAAAGCCGGCAGGTG
TTCAAGAAGGTGCTGAAGAACGGGGCCGAGGGCATCTTCCAGGGCAAGATCCTGGTCAAGCCCGGCGCGCAAAAGACCGA
CGGCTACCAGATCAGCCAGGGGCTGCTTCTGGACGAGGGCAGCCAGTTCCTCGCCAAGCCCGAGCTGGAGATCTATGCCG
ACGACGTGAAATGCTCGCATGGCTCGACGACCGGCGCGCTGGACGAGACTGCGCTGTTCTACCTGCGCTCGCGCGGGGTG
CCGAAGGAACGCGCCATCGTGCTTCTGGTGCTGTCCTTCCTGGCCGATGCGCTGGACGAGATCGAGGACCAGCGGCTGCG
CGACGACATCCTCGGCCGGCTGGAAGACTGGCTGACCGCGCGCGCGGGCAATTCGGCCACCGCATGA

Upstream 100 bases:

>100_bases
ATATCATGGCCGATGGCCGCATCGTGCGCACCGGCGGCCCCGAACTGGCGCTGGAGGTCGAGCAGAACGGCTACGGCGAT
CTGCTGGCGGAGGTCGGATG

Downstream 100 bases:

>100_bases
GCCGGGCCGGCATCGCCCCGCGCATCCTTGAAAGCTGGTGGGCGCCGGGCAGGGTGGTCAGATCCCTGCGCGGCATGCCC
GACCGGGCGCTGATCGTCGT

Product: SufBD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MADTAVLAAQVPAVEGKVRPGDAALAARLDALDLPRGGFTRAAREDAAQRLQAMGLPGARDEYWRYTDPAPFNAARPEPV
EFGADASTLFTGIERLNLVFVDGRFDAAASDVLDVEGVEIESLAAAEAAADHWAAGLYGRLETAGQVPVKRPFAVLNTLA
AAEGVLIRVTGKVERPVHITYRRSAPDADVYLHHVVKLEEGAELTLLESGAIGARSNVVIEADLGRGARFHHISAKRAND
PKLGLGHIFARVAAEALFKSFSLSVNGSMMRNEAVIEIAGDDAVAHIAAAVLGDGDTGRFHHDDTVFVTHAAERCESRQV
FKKVLKNGAEGIFQGKILVKPGAQKTDGYQISQGLLLDEGSQFLAKPELEIYADDVKCSHGSTTGALDETALFYLRSRGV
PKERAIVLLVLSFLADALDEIEDQRLRDDILGRLEDWLTARAGNSATA

Sequences:

>Translated_448_residues
MADTAVLAAQVPAVEGKVRPGDAALAARLDALDLPRGGFTRAAREDAAQRLQAMGLPGARDEYWRYTDPAPFNAARPEPV
EFGADASTLFTGIERLNLVFVDGRFDAAASDVLDVEGVEIESLAAAEAAADHWAAGLYGRLETAGQVPVKRPFAVLNTLA
AAEGVLIRVTGKVERPVHITYRRSAPDADVYLHHVVKLEEGAELTLLESGAIGARSNVVIEADLGRGARFHHISAKRAND
PKLGLGHIFARVAAEALFKSFSLSVNGSMMRNEAVIEIAGDDAVAHIAAAVLGDGDTGRFHHDDTVFVTHAAERCESRQV
FKKVLKNGAEGIFQGKILVKPGAQKTDGYQISQGLLLDEGSQFLAKPELEIYADDVKCSHGSTTGALDETALFYLRSRGV
PKERAIVLLVLSFLADALDEIEDQRLRDDILGRLEDWLTARAGNSATA
>Mature_447_residues
ADTAVLAAQVPAVEGKVRPGDAALAARLDALDLPRGGFTRAAREDAAQRLQAMGLPGARDEYWRYTDPAPFNAARPEPVE
FGADASTLFTGIERLNLVFVDGRFDAAASDVLDVEGVEIESLAAAEAAADHWAAGLYGRLETAGQVPVKRPFAVLNTLAA
AEGVLIRVTGKVERPVHITYRRSAPDADVYLHHVVKLEEGAELTLLESGAIGARSNVVIEADLGRGARFHHISAKRANDP
KLGLGHIFARVAAEALFKSFSLSVNGSMMRNEAVIEIAGDDAVAHIAAAVLGDGDTGRFHHDDTVFVTHAAERCESRQVF
KKVLKNGAEGIFQGKILVKPGAQKTDGYQISQGLLLDEGSQFLAKPELEIYADDVKCSHGSTTGALDETALFYLRSRGVP
KERAIVLLVLSFLADALDEIEDQRLRDDILGRLEDWLTARAGNSATA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=406, Percent_Identity=28.0788177339901, Blast_Score=139, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47991; Mature: 47859

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTAVLAAQVPAVEGKVRPGDAALAARLDALDLPRGGFTRAAREDAAQRLQAMGLPGAR
CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
DEYWRYTDPAPFNAARPEPVEFGADASTLFTGIERLNLVFVDGRFDAAASDVLDVEGVEI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCHHCCEECCCCCH
ESLAAAEAAADHWAAGLYGRLETAGQVPVKRPFAVLNTLAAAEGVLIRVTGKVERPVHIT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEE
YRRSAPDADVYLHHVVKLEEGAELTLLESGAIGARSNVVIEADLGRGARFHHISAKRAND
EECCCCCHHHHEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCC
PKLGLGHIFARVAAEALFKSFSLSVNGSMMRNEAVIEIAGDDAVAHIAAAVLGDGDTGRF
CCCCHHHHHHHHHHHHHHHHHCEEECCCEECCCEEEEECCCCHHHHHHHHHHCCCCCCCE
HHDDTVFVTHAAERCESRQVFKKVLKNGAEGIFQGKILVKPGAQKTDGYQISQGLLLDEG
ECCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEECEEEECCCCCCCCCEEECCCEEECCC
SQFLAKPELEIYADDVKCSHGSTTGALDETALFYLRSRGVPKERAIVLLVLSFLADALDE
CHHHCCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
IEDQRLRDDILGRLEDWLTARAGNSATA
HHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ADTAVLAAQVPAVEGKVRPGDAALAARLDALDLPRGGFTRAAREDAAQRLQAMGLPGAR
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
DEYWRYTDPAPFNAARPEPVEFGADASTLFTGIERLNLVFVDGRFDAAASDVLDVEGVEI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCHHCCEECCCCCH
ESLAAAEAAADHWAAGLYGRLETAGQVPVKRPFAVLNTLAAAEGVLIRVTGKVERPVHIT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEE
YRRSAPDADVYLHHVVKLEEGAELTLLESGAIGARSNVVIEADLGRGARFHHISAKRAND
EECCCCCHHHHEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCC
PKLGLGHIFARVAAEALFKSFSLSVNGSMMRNEAVIEIAGDDAVAHIAAAVLGDGDTGRF
CCCCHHHHHHHHHHHHHHHHHCEEECCCEECCCEEEEECCCCHHHHHHHHHHCCCCCCCE
HHDDTVFVTHAAERCESRQVFKKVLKNGAEGIFQGKILVKPGAQKTDGYQISQGLLLDEG
ECCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEECEEEECCCCCCCCCEEECCCEEECCC
SQFLAKPELEIYADDVKCSHGSTTGALDETALFYLRSRGVPKERAIVLLVLSFLADALDE
CHHHCCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
IEDQRLRDDILGRLEDWLTARAGNSATA
HHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]