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The map label for this gene is 119386656

Identifier: 119386656

GI number: 119386656

Start: 1084712

End: 1085308

Strand: Direct

Name: 119386656

Synonym: Pden_3949

Alternate gene names: NA

Gene position: 1084712-1085308 (Clockwise)

Preceding gene: 119386655

Following gene: 119386657

Centisome position: 62.7

GC content: 60.3

Gene sequence:

>597_bases
ATGCTGGACGACCATGGCGAATTCCGAACCCAATTCGTGCGCGAGCCATCCTTCTTGCGCCACCATCCCGCACTGGTCCT
AAACGCCGATTTCAGACCGCTCAGCTATTATCCGCTGTCGCTCTGGCCCTGGCAGGAGGCGGTGAAGGCGGTGTTCCTGG
ACCGTGTCCAGATCATCGCCGAATATGACGAGGTGGTGCGCAGCCAGCATCACGCGATACGCATCCCCTCGGTCGTCGTG
CTGAAAGACTTCGTCAAACCCCAGAAGCGCGTGGCATTCACGCGCTTCAATCTTTTTCTGCGGGACGAATTCTGCTGCCA
GTATTGCGGTGCGAAGGGCGAGTTGACCTTTGACCATGTCCTGCCGCGCTCGCGCGGAGGGATCACCAGTTGGGAGAATG
TTGTCGCCGCCTGTTCGCCCTGCAACCTGAGGAAGGCCAACAAACTGCTGAAGAATTCGGGACTTAGGCTGCGTCGCCCG
CCTCGCCGGCCCACGCCGGAGGAGATGCACGCCATCGGCCGGCGCTTCCCGCCCAACCATCTGCACGACAGCTGGATGGA
TTTTCTCTACTGGGATACGGAGCTGATTGCGGAGTAG

Upstream 100 bases:

>100_bases
TGTGTGCCAGGCATATATTCAGGGACTTGTCAGCCCGGAACCGCGATATATAGTCGGTGCCATGTTCTGACCCGTCCCGG
ACAAGGCGAAGCGAGGGCCG

Downstream 100 bases:

>100_bases
AATGTCTCGGTAATCAGTTGTTATATCTGGTATTTTCTCTGCATCCTGACAGTTTTTCGGACAGAGTCGGCTTGGGACGC
AGCGGATTTATTGCAGCGAC

Product: HNH endonuclease

Products: NA

Alternate protein names: HNH Endonuclease Family Protein; Endonuclease; HNH Endonuclease Domain-Containing Protein; Restriction Endonuclease; HNH Endonuclease Domain Protein; HNH Nuclease; Hnh Endonuclease; McrA/HNH Family Nuclease; 5-Methylcytosine-Specific Restriction A; 5-Methylcytosine-Specific Restriction Protein; Restriction Endonuclease McrA/HNH Family; HNH EndonucleaseHNH Nuclease; HNH Family Endonuclease; LOW QUALITY PROTEIN Endonuclease; Hnh Endonuclease Domain Protein; 5-Methylcytosine-Specific Restriction Protein A

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLDDHGEFRTQFVREPSFLRHHPALVLNADFRPLSYYPLSLWPWQEAVKAVFLDRVQIIAEYDEVVRSQHHAIRIPSVVV
LKDFVKPQKRVAFTRFNLFLRDEFCCQYCGAKGELTFDHVLPRSRGGITSWENVVAACSPCNLRKANKLLKNSGLRLRRP
PRRPTPEEMHAIGRRFPPNHLHDSWMDFLYWDTELIAE

Sequences:

>Translated_198_residues
MLDDHGEFRTQFVREPSFLRHHPALVLNADFRPLSYYPLSLWPWQEAVKAVFLDRVQIIAEYDEVVRSQHHAIRIPSVVV
LKDFVKPQKRVAFTRFNLFLRDEFCCQYCGAKGELTFDHVLPRSRGGITSWENVVAACSPCNLRKANKLLKNSGLRLRRP
PRRPTPEEMHAIGRRFPPNHLHDSWMDFLYWDTELIAE
>Mature_198_residues
MLDDHGEFRTQFVREPSFLRHHPALVLNADFRPLSYYPLSLWPWQEAVKAVFLDRVQIIAEYDEVVRSQHHAIRIPSVVV
LKDFVKPQKRVAFTRFNLFLRDEFCCQYCGAKGELTFDHVLPRSRGGITSWENVVAACSPCNLRKANKLLKNSGLRLRRP
PRRPTPEEMHAIGRRFPPNHLHDSWMDFLYWDTELIAE

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23267; Mature: 23267

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDHGEFRTQFVREPSFLRHHPALVLNADFRPLSYYPLSLWPWQEAVKAVFLDRVQIIA
CCCCCHHHHHHHHCCCHHHHHCCCEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH
EYDEVVRSQHHAIRIPSVVVLKDFVKPQKRVAFTRFNLFLRDEFCCQYCGAKGELTFDHV
HHHHHHHHCCCEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHH
LPRSRGGITSWENVVAACSPCNLRKANKLLKNSGLRLRRPPRRPTPEEMHAIGRRFPPNH
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCC
LHDSWMDFLYWDTELIAE
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDDHGEFRTQFVREPSFLRHHPALVLNADFRPLSYYPLSLWPWQEAVKAVFLDRVQIIA
CCCCCHHHHHHHHCCCHHHHHCCCEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH
EYDEVVRSQHHAIRIPSVVVLKDFVKPQKRVAFTRFNLFLRDEFCCQYCGAKGELTFDHV
HHHHHHHHCCCEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHH
LPRSRGGITSWENVVAACSPCNLRKANKLLKNSGLRLRRPPRRPTPEEMHAIGRRFPPNH
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCC
LHDSWMDFLYWDTELIAE
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA