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The map label for this gene is deoC [H]

Identifier: 119386604

GI number: 119386604

Start: 1030550

End: 1031494

Strand: Direct

Name: deoC [H]

Synonym: Pden_3897

Alternate gene names: 119386604

Gene position: 1030550-1031494 (Clockwise)

Preceding gene: 119386603

Following gene: 119386605

Centisome position: 59.57

GC content: 68.78

Gene sequence:

>945_bases
ATGGAGCGCAAGAACCCCGGCACCGATTTCCGCCTCGACTGGTTCGAGAACATCCAGGTCAACACCCCGGCCGCCGAGCG
CCGCGCCACGAGCCTGGCCGCGCGACGCAGTCTCAAGAAGGAATGGCAGGCGGCCTGGCTTCTGAACGCGGTGCGCTGCA
TCGACCTGACCACGCTTTCGGGCGACGACACGCCCGACCGCGTGGCGCGGCTTTGCGCCAAGGCGCGCCAGCCCGTCGAT
GCCGGCCAGCTTGCCGCGCTGGGGGTCGAGCATCTGACCACCGGCGCGGTCTGCGTCTATCCGACCATGGTCGCGGCGGC
AAAGCGGGCGCTGCGGGGCACCGCGATCCCCGTCGCCTCGGTCGCGACCGGCTTTCCCGCCGGGCTGATGCCGCTGGACC
TGCGGCTGGCCGAGATCCGCTATGCGCTGGACCAGGGCGCGGACGAAATCGACATCGTGATTTCCCGTGCGCTGGTGCTG
CGCGGCGAATGGGCGGCGCTTTACGACGAGATATGCGAGATGCGCGAGGCTTGCGGCTCGGCGCGGATGAAGGCGATCCT
GGCGACGGGCGAGCTCAAGACCCTGACCAATGTCGCCAGGGCCAGCCATGTCGCCATGCAGGCCGGCGCCGATTTCATCA
AGACCTCGACCGGAAAAGAGCCGGTGAACGCCACGCTGCCGGTGTCGCTGGTCATGTTGCGCGCCATCCGCGACTATCGC
GACCAGACCGGCTTTGCCGTGGGCTTCAAGCCGGCTGGCGGGTTGCGGACGGCCAAGGATGCGCTGAACTGGCAGGTGCT
GATGGCCGAGGAGCTGGGCCGCGACTGGCTGCGGCCCGATCTGTTCCGCATCGGCGCCAGTTCGCTGTTGGCCGATATCG
AGCGGCAGATTTCCCATCACGTCACCGGGCGCTATGCCGGCGCCCATCGTCTGGCCGCGGGGTGA

Upstream 100 bases:

>100_bases
CGAAGCATGGGACCGGCTGGACGCCCGCGCCGACGCGGCCCGCGACCGGGCACGCGGCCGCATGCGGCGCTGGTGGGACG
GGCTGCGGGGACGCTGAGCG

Downstream 100 bases:

>100_bases
ACATGCCGAAGGTAAGCGAGATCATGGAAAGCATGGAATACGGCCCTGCGCCCGAGGATGCCTCTGCCGTCCGCGACTGG
CTGCGCGAACGCGGCAGCTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MERKNPGTDFRLDWFENIQVNTPAAERRATSLAARRSLKKEWQAAWLLNAVRCIDLTTLSGDDTPDRVARLCAKARQPVD
AGQLAALGVEHLTTGAVCVYPTMVAAAKRALRGTAIPVASVATGFPAGLMPLDLRLAEIRYALDQGADEIDIVISRALVL
RGEWAALYDEICEMREACGSARMKAILATGELKTLTNVARASHVAMQAGADFIKTSTGKEPVNATLPVSLVMLRAIRDYR
DQTGFAVGFKPAGGLRTAKDALNWQVLMAEELGRDWLRPDLFRIGASSLLADIERQISHHVTGRYAGAHRLAAG

Sequences:

>Translated_314_residues
MERKNPGTDFRLDWFENIQVNTPAAERRATSLAARRSLKKEWQAAWLLNAVRCIDLTTLSGDDTPDRVARLCAKARQPVD
AGQLAALGVEHLTTGAVCVYPTMVAAAKRALRGTAIPVASVATGFPAGLMPLDLRLAEIRYALDQGADEIDIVISRALVL
RGEWAALYDEICEMREACGSARMKAILATGELKTLTNVARASHVAMQAGADFIKTSTGKEPVNATLPVSLVMLRAIRDYR
DQTGFAVGFKPAGGLRTAKDALNWQVLMAEELGRDWLRPDLFRIGASSLLADIERQISHHVTGRYAGAHRLAAG
>Mature_314_residues
MERKNPGTDFRLDWFENIQVNTPAAERRATSLAARRSLKKEWQAAWLLNAVRCIDLTTLSGDDTPDRVARLCAKARQPVD
AGQLAALGVEHLTTGAVCVYPTMVAAAKRALRGTAIPVASVATGFPAGLMPLDLRLAEIRYALDQGADEIDIVISRALVL
RGEWAALYDEICEMREACGSARMKAILATGELKTLTNVARASHVAMQAGADFIKTSTGKEPVNATLPVSLVMLRAIRDYR
DQTGFAVGFKPAGGLRTAKDALNWQVLMAEELGRDWLRPDLFRIGASSLLADIERQISHHVTGRYAGAHRLAAG

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=315, Percent_Identity=62.5396825396825, Blast_Score=390, Evalue=1e-109,
Organism=Escherichia coli, GI1790841, Length=242, Percent_Identity=39.2561983471074, Blast_Score=153, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17533015, Length=282, Percent_Identity=45.0354609929078, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI19922098, Length=294, Percent_Identity=46.9387755102041, Blast_Score=246, Evalue=1e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 34074; Mature: 34074

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKNPGTDFRLDWFENIQVNTPAAERRATSLAARRSLKKEWQAAWLLNAVRCIDLTTLS
CCCCCCCCCEEEEHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
GDDTPDRVARLCAKARQPVDAGQLAALGVEHLTTGAVCVYPTMVAAAKRALRGTAIPVAS
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHH
VATGFPAGLMPLDLRLAEIRYALDQGADEIDIVISRALVLRGEWAALYDEICEMREACGS
HHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ARMKAILATGELKTLTNVARASHVAMQAGADFIKTSTGKEPVNATLPVSLVMLRAIRDYR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
DQTGFAVGFKPAGGLRTAKDALNWQVLMAEELGRDWLRPDLFRIGASSLLADIERQISHH
HHCCCEEEECCCCCCHHHHHHHCHHEEEHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHH
VTGRYAGAHRLAAG
HCCCCCCCHHCCCC
>Mature Secondary Structure
MERKNPGTDFRLDWFENIQVNTPAAERRATSLAARRSLKKEWQAAWLLNAVRCIDLTTLS
CCCCCCCCCEEEEHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
GDDTPDRVARLCAKARQPVDAGQLAALGVEHLTTGAVCVYPTMVAAAKRALRGTAIPVAS
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHH
VATGFPAGLMPLDLRLAEIRYALDQGADEIDIVISRALVLRGEWAALYDEICEMREACGS
HHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ARMKAILATGELKTLTNVARASHVAMQAGADFIKTSTGKEPVNATLPVSLVMLRAIRDYR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
DQTGFAVGFKPAGGLRTAKDALNWQVLMAEELGRDWLRPDLFRIGASSLLADIERQISHH
HHCCCEEEECCCCCCHHHHHHHCHHEEEHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHH
VTGRYAGAHRLAAG
HCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA