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The map label for this gene is ydhC [H]

Identifier: 119386103

GI number: 119386103

Start: 534444

End: 535115

Strand: Direct

Name: ydhC [H]

Synonym: Pden_3389

Alternate gene names: 119386103

Gene position: 534444-535115 (Clockwise)

Preceding gene: 119386095

Following gene: 119386107

Centisome position: 30.89

GC content: 61.31

Gene sequence:

>672_bases
TTGGATATCGAAAAACAGTGGCCGCGCGGACAACGCGCCGCCTTTGTCGCAAATTTCATTCGCGATCAAATCGTCTCGGG
CGAGCTTGCCGCCAGCACCAGGATCAATGAACGTGTGCTTACGGAACAACTGGGCGTGTCGCGCACGCCACTGCGTGAAG
CCTTTAAGATTCTGGAAAGCGAAGGTCTGCTGACTATCGAGCCGAACCGCGGCGCAATGGTGACGGCGATCTCGCCGCAA
GAGGTGGAACTGGCGATCGAGGTGCTGATCGCGCTGGAGAGCGTGGCCGCCGAACGCGCCTGCAAACATGCCACCGACGC
CCAGATCGACGAGATCCAGGCCCTGCATGACGAGATGGTAGGCGCCTGGAAGGCTGGGGCGCTTATGCGCTATTTCCACA
TCAACCAGACCATCCATCAGAAGATTGTCGACTGCGCAGCCAATCCGACGCTTTCAAGGCTCTACATGGCTGAAAGCCAG
CGGATCCGCCGGTTCCGCTATGCGGGCAATCAGATCAGCGACCGCTGGGCGCGCGCGGTCTACGAGCACGAGCAAATCCT
CGATGCCCTGCGCCATCGCCAGGGCGCCTTGCTGCGCGAGGTCCTGCGCAGCCATCACCTCAGTGGCTGGCGTACCACCC
GTGCGGTGCTGGAAGGCGAGATCCGGCTTTAG

Upstream 100 bases:

>100_bases
TGTTTGCATGCAACTGCCCGATGGAGTCAATCAAAATGTTGATCCCGCCAACGCCCCTCCCTAGATTGCATGCAACTTTC
GTGTCAAAGCAGAGGCGATC

Downstream 100 bases:

>100_bases
GCGGCGTTCGCTTTCCGTACTGGGCATCGGTGCGCTACGCGCTTCAGATCGAGCAGCCACGCAAACCATGGCCTGACGTT
TGCAAGGCTTCAAGGACGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDIEKQWPRGQRAAFVANFIRDQIVSGELAASTRINERVLTEQLGVSRTPLREAFKILESEGLLTIEPNRGAMVTAISPQ
EVELAIEVLIALESVAAERACKHATDAQIDEIQALHDEMVGAWKAGALMRYFHINQTIHQKIVDCAANPTLSRLYMAESQ
RIRRFRYAGNQISDRWARAVYEHEQILDALRHRQGALLREVLRSHHLSGWRTTRAVLEGEIRL

Sequences:

>Translated_223_residues
MDIEKQWPRGQRAAFVANFIRDQIVSGELAASTRINERVLTEQLGVSRTPLREAFKILESEGLLTIEPNRGAMVTAISPQ
EVELAIEVLIALESVAAERACKHATDAQIDEIQALHDEMVGAWKAGALMRYFHINQTIHQKIVDCAANPTLSRLYMAESQ
RIRRFRYAGNQISDRWARAVYEHEQILDALRHRQGALLREVLRSHHLSGWRTTRAVLEGEIRL
>Mature_223_residues
MDIEKQWPRGQRAAFVANFIRDQIVSGELAASTRINERVLTEQLGVSRTPLREAFKILESEGLLTIEPNRGAMVTAISPQ
EVELAIEVLIALESVAAERACKHATDAQIDEIQALHDEMVGAWKAGALMRYFHINQTIHQKIVDCAANPTLSRLYMAESQ
RIRRFRYAGNQISDRWARAVYEHEQILDALRHRQGALLREVLRSHHLSGWRTTRAVLEGEIRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=195, Percent_Identity=28.7179487179487, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25370; Mature: 25370

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIEKQWPRGQRAAFVANFIRDQIVSGELAASTRINERVLTEQLGVSRTPLREAFKILES
CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
EGLLTIEPNRGAMVTAISPQEVELAIEVLIALESVAAERACKHATDAQIDEIQALHDEMV
CCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GAWKAGALMRYFHINQTIHQKIVDCAANPTLSRLYMAESQRIRRFRYAGNQISDRWARAV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YEHEQILDALRHRQGALLREVLRSHHLSGWRTTRAVLEGEIRL
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDIEKQWPRGQRAAFVANFIRDQIVSGELAASTRINERVLTEQLGVSRTPLREAFKILES
CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
EGLLTIEPNRGAMVTAISPQEVELAIEVLIALESVAAERACKHATDAQIDEIQALHDEMV
CCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GAWKAGALMRYFHINQTIHQKIVDCAANPTLSRLYMAESQRIRRFRYAGNQISDRWARAV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YEHEQILDALRHRQGALLREVLRSHHLSGWRTTRAVLEGEIRL
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]