Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 119386075

GI number: 119386075

Start: 513986

End: 514396

Strand: Direct

Name: ssb [H]

Synonym: Pden_3361

Alternate gene names: 119386075

Gene position: 513986-514396 (Clockwise)

Preceding gene: 119386073

Following gene: 119386076

Centisome position: 29.71

GC content: 66.42

Gene sequence:

>411_bases
ATGCAGAACATCGTCATCCTCGCCGGCACCATCCGCCAGGCCCCCGAAACCCGCACCACCCGCACCGGCACCGACGTCAC
CCGCTTCAAGCTGGTCACCTCGCGCCCGCGCTATTCGGAAGGCCGGGTCGTGCGCGACGAGAAGGGCTATCGGGTCGAGG
ACGCGGAATGGCACCGCATCGTCGCCTTCAACGGCCTGGGCCGGACCATCCAGCAATATTGCGACACCGGCACGAAGGTG
CTGGTGCGCGGCCGCATCCACTACACGAAATGGCAGGATGCGGAAGGCCAGGACCGCTACGGCTGCGAGATCGTCGCCGA
GACGGTGGATTTCCTGAGCCGGGCGCCGCAGTCCGAGACCGACGACGAGGACGAAGGCCGGTTCATCGACGAAGACGACA
TCCCGACCTGA

Upstream 100 bases:

>100_bases
AGCTGCCGCCCAGGGGCGTCAGTTGCAAGTGCCTCCCGACGGACTTTCCCGGGTCTCGTCGGAGGGAATGGTCCCTCCGG
AGCAGCAACGGAGACAGACA

Downstream 100 bases:

>100_bases
GCGGGAGGCCAGAGGCCCGGCGGTTCCAGCCGCCGGGTTTTCCATGGGCAAGGCGGTTCGCCCCGAGGCCGCGCCGGCAA
GAGAAGGCTTCCCGACCGGA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MQNIVILAGTIRQAPETRTTRTGTDVTRFKLVTSRPRYSEGRVVRDEKGYRVEDAEWHRIVAFNGLGRTIQQYCDTGTKV
LVRGRIHYTKWQDAEGQDRYGCEIVAETVDFLSRAPQSETDDEDEGRFIDEDDIPT

Sequences:

>Translated_136_residues
MQNIVILAGTIRQAPETRTTRTGTDVTRFKLVTSRPRYSEGRVVRDEKGYRVEDAEWHRIVAFNGLGRTIQQYCDTGTKV
LVRGRIHYTKWQDAEGQDRYGCEIVAETVDFLSRAPQSETDDEDEGRFIDEDDIPT
>Mature_136_residues
MQNIVILAGTIRQAPETRTTRTGTDVTRFKLVTSRPRYSEGRVVRDEKGYRVEDAEWHRIVAFNGLGRTIQQYCDTGTKV
LVRGRIHYTKWQDAEGQDRYGCEIVAETVDFLSRAPQSETDDEDEGRFIDEDDIPT

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=104, Percent_Identity=37.5, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15642; Mature: 15642

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00018 EF_HAND_1 ; PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIVILAGTIRQAPETRTTRTGTDVTRFKLVTSRPRYSEGRVVRDEKGYRVEDAEWHRI
CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCEECCCCCEEE
VAFNGLGRTIQQYCDTGTKVLVRGRIHYTKWQDAEGQDRYGCEIVAETVDFLSRAPQSET
EEECCCCHHHHHHHCCCCEEEEECEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
DDEDEGRFIDEDDIPT
CCCCCCCEECCCCCCC
>Mature Secondary Structure
MQNIVILAGTIRQAPETRTTRTGTDVTRFKLVTSRPRYSEGRVVRDEKGYRVEDAEWHRI
CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCEECCCCCEEE
VAFNGLGRTIQQYCDTGTKVLVRGRIHYTKWQDAEGQDRYGCEIVAETVDFLSRAPQSET
EEECCCCHHHHHHHCCCCEEEEECEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
DDEDEGRFIDEDDIPT
CCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948488 [H]