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The map label for this gene is yqhC [H]

Identifier: 119386045

GI number: 119386045

Start: 492010

End: 492963

Strand: Direct

Name: yqhC [H]

Synonym: Pden_3330

Alternate gene names: 119386045

Gene position: 492010-492963 (Clockwise)

Preceding gene: 119386044

Following gene: 119386046

Centisome position: 28.44

GC content: 68.55

Gene sequence:

>954_bases
ATGCGCGCCGATTTCGGGCTGCGCACCGCGCGCAGGGATCCTAGATTGCGGTTCATGGAAAACGATCATCTTGCCCCGCT
CAAGGAGTTGATCGCCCGCCAGTGGCAGGCGCATGGCCGGGAAACCCCGATCGAGGGGCTGGTCCTGACCTCGGTCACCG
CGCCGACCGGGCCGATCCATGCGGTCTATCGCCCGTCGCTCTGCGTCGTGGCGCAGGGCGCCAAGACCAGCATGCTTGGC
GAACGCGCCTATCGCTATGACGCCGGAAAATGCCTGATCGCATCGATGGAGGTGCCGATCCGGGCCGAGATCACCCGCGC
CACGCCCGACCGACCCTACCTGGCCTTCAGCCTGGCCCTGGACCCCGCGACGATCTCCGATCTGCTGCTGGAACGGGATG
GCACCGACGACGCCCCCGCCGGTGCCGCGCTGGCGGTGCATGCCTTTGGGCCGGAACTTGCCGATCCCCTCTGCCGGTTG
CTGGCCCTGTGCGACCGGCCGCGCGACATCGCGATCCTCGCGCCGCTGGTCCGGCGGGAGATCACCTGGCTTCTGCTGAA
CGGACCGATGGGACCGGCGCTGCGCCAGATCGGCCTCGCCGGCAGTCCCATGGCGCGGATCGCCCGGGCCATCGCCTGCA
TCCGCGAGGGCTTCGCGGATAAGCTGAACATACGCCAGCTTGCCGATGTCGCCGGAATGAGCCCCGCGACCTTCCACCGC
CACTTCAAGGCGGTCACGGCGATGACGCCGGTGCAGTACCAGAAGCAGCTTCGGCTGCAGGAGGCACGCCGCCTGCTGCT
CTTCGACAATGCCGATGTCGCCCGGATCGGCTACGCCATCGGCTATGAGAGCCCGTCGCAGTTCAGCCGGGAATATCGCC
GCCTGTTCGGATCGCCGCCGGGCCGGGACGGGCAGGAGATCCGCAGGAGCCTCGCGCCGCAGGTCGAGGGATGA

Upstream 100 bases:

>100_bases
GAGACGTCGGGGGCGGAATGCCGCCGGGTTGAGGCAAAGATAGGGCTGCCCTGCCCGGGATCGCGACGCCGATCCTCGCA
AATCCTTGCACGATCCTCTT

Downstream 100 bases:

>100_bases
GAGGGGCGGCGACAAGGGCGGACAGCCGACCTTCGCTGCGCAATGCGCGAGCATCTCCGATCCGCAGTGAAGCGGACAGT
GGCCACGTTCCGCGGGCCAG

Product: AraC-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRADFGLRTARRDPRLRFMENDHLAPLKELIARQWQAHGRETPIEGLVLTSVTAPTGPIHAVYRPSLCVVAQGAKTSMLG
ERAYRYDAGKCLIASMEVPIRAEITRATPDRPYLAFSLALDPATISDLLLERDGTDDAPAGAALAVHAFGPELADPLCRL
LALCDRPRDIAILAPLVRREITWLLLNGPMGPALRQIGLAGSPMARIARAIACIREGFADKLNIRQLADVAGMSPATFHR
HFKAVTAMTPVQYQKQLRLQEARRLLLFDNADVARIGYAIGYESPSQFSREYRRLFGSPPGRDGQEIRRSLAPQVEG

Sequences:

>Translated_317_residues
MRADFGLRTARRDPRLRFMENDHLAPLKELIARQWQAHGRETPIEGLVLTSVTAPTGPIHAVYRPSLCVVAQGAKTSMLG
ERAYRYDAGKCLIASMEVPIRAEITRATPDRPYLAFSLALDPATISDLLLERDGTDDAPAGAALAVHAFGPELADPLCRL
LALCDRPRDIAILAPLVRREITWLLLNGPMGPALRQIGLAGSPMARIARAIACIREGFADKLNIRQLADVAGMSPATFHR
HFKAVTAMTPVQYQKQLRLQEARRLLLFDNADVARIGYAIGYESPSQFSREYRRLFGSPPGRDGQEIRRSLAPQVEG
>Mature_317_residues
MRADFGLRTARRDPRLRFMENDHLAPLKELIARQWQAHGRETPIEGLVLTSVTAPTGPIHAVYRPSLCVVAQGAKTSMLG
ERAYRYDAGKCLIASMEVPIRAEITRATPDRPYLAFSLALDPATISDLLLERDGTDDAPAGAALAVHAFGPELADPLCRL
LALCDRPRDIAILAPLVRREITWLLLNGPMGPALRQIGLAGSPMARIARAIACIREGFADKLNIRQLADVAGMSPATFHR
HFKAVTAMTPVQYQKQLRLQEARRLLLFDNADVARIGYAIGYESPSQFSREYRRLFGSPPGRDGQEIRRSLAPQVEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=302, Percent_Identity=31.7880794701987, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1790339, Length=131, Percent_Identity=35.1145038167939, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34966; Mature: 34966

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRADFGLRTARRDPRLRFMENDHLAPLKELIARQWQAHGRETPIEGLVLTSVTAPTGPIH
CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEE
AVYRPSLCVVAQGAKTSMLGERAYRYDAGKCLIASMEVPIRAEITRATPDRPYLAFSLAL
EEECCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEE
DPATISDLLLERDGTDDAPAGAALAVHAFGPELADPLCRLLALCDRPRDIAILAPLVRRE
CCHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
ITWLLLNGPMGPALRQIGLAGSPMARIARAIACIREGFADKLNIRQLADVAGMSPATFHR
EEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH
HFKAVTAMTPVQYQKQLRLQEARRLLLFDNADVARIGYAIGYESPSQFSREYRRLFGSPP
HHHHHHHCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC
GRDGQEIRRSLAPQVEG
CCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MRADFGLRTARRDPRLRFMENDHLAPLKELIARQWQAHGRETPIEGLVLTSVTAPTGPIH
CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEE
AVYRPSLCVVAQGAKTSMLGERAYRYDAGKCLIASMEVPIRAEITRATPDRPYLAFSLAL
EEECCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEE
DPATISDLLLERDGTDDAPAGAALAVHAFGPELADPLCRLLALCDRPRDIAILAPLVRRE
CCHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
ITWLLLNGPMGPALRQIGLAGSPMARIARAIACIREGFADKLNIRQLADVAGMSPATFHR
EEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH
HFKAVTAMTPVQYQKQLRLQEARRLLLFDNADVARIGYAIGYESPSQFSREYRRLFGSPP
HHHHHHHCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC
GRDGQEIRRSLAPQVEG
CCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]