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The map label for this gene is trbI [H]

Identifier: 119385925

GI number: 119385925

Start: 367428

End: 368594

Strand: Direct

Name: trbI [H]

Synonym: Pden_3203

Alternate gene names: 119385925

Gene position: 367428-368594 (Clockwise)

Preceding gene: 119385924

Following gene: 119385926

Centisome position: 21.24

GC content: 70.35

Gene sequence:

>1167_bases
ATGAGCGACAGGGACACCGCCGCCGCGCCGCTGCGCCTGCGGGCAGAGCCGCCCCGTGTCACCCGGTTGTCGCGCAAGGT
GCTGGCGGGCCTCGGTGGGATCGCCGCACTCGGCATCGGGGCGGCGCTGATCTTTGCCCTGCAAACCCGCGACGTCGAGC
GCGGCGGCGAGGAACTGTTCTCCACCGAAAACCGCGCCACCGCCGACGGGCTGGCGGAACTGCCGCGCGACTATGCCGGT
CCCGTCCTCGGCCCGGCGCTGCCCGGGGATCTCGGCAAGCCGATCCTCAATGCGCGCAATCGTGGTGAGCCGGTGCCCGC
GCCCGGCACGCCCACCGTCACCGCACCCGCCATGGATGCGGCGGAGCAGCAGCGGCTGGCGGAAGAAGAGGCGGCAAGGC
TCAGCGGCGTGTTCTTTCAGGGTGGGCCACGGTCTGCGGGCGGGTCGGACATGGGCGCAGGGCCAGCCGGTCAGACCCCA
GGCGCGCTTGGCACCATGGGACAGCCCGGCGCCGCAGCCACGCAGGACCGGCATGCGGCGTTCCTGGGCGGCGCCGCAGA
TCGCATCACCGTTGCCCCGGATCGTGTCGAAGCTCCTGCCTCACCCTATCTGCTGCAGGCCGGATCGGTGATCCCGGCGG
CGCTGATCACCGGCATCCGCTCCGATCTGCCCGGCCAGATCATCGCCCAGGTGACGCAGCCGGTCTACGACAGCCCTACC
GGCTCGATCCTGCTGATCCCGCAGGGCACCCGCGTCATCGGCGAATACGATGCCAGTGTCACATTCGGCCAGCGCCGGGT
GCTGCTCGTCTGGAACAGGCTGATCTTTCCCGATGGCCGCTCGCTGGTGCTGGAGCGCCTGCCGGGCGCCGATGCCAGCG
GCTATGCCGGGCTCGAGGACGGGGTCGATTACCATTGGGGAGAGCTGATAAAGGCGGCCGGGCTGTCGACGCTGCTGGCG
GTCGGCACCGAACTCACCGCCGGTGACGACGACGACCGGCTGGTCCGCGCCATCCGCGACGGCGCCCAGGATACCGTCGA
CCAGGCCGGCCAGCAGATCGTCCAGCGCCAGCTGCTGGTCGCCCCCACGCTGACCATCCGGCCCGGATTCCCGGTCAGGA
TTCTTGTCGGCAGAGACTTGGTCTTCGAGAACGCAGGAGAAAGATGA

Upstream 100 bases:

>100_bases
TCGGCTCGGGAAAACGCCAGCAGGTGGTCAGGATTATCCGTATGGAACAGACACGGGCGGCCATCCAGCCGACCCGTGCG
CCGACGAAAGGATCGTCCTG

Downstream 100 bases:

>100_bases
TGACGAAGCTGAAGCTGGGGCCGCTCGCGGACGATACGCCGGTGAAGCTGGCTGTCGAATTGCCGGCGAGCCTGCACAGG
GATCTCGTGCTTTATGGCGA

Product: conjugation TrbI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSDRDTAAAPLRLRAEPPRVTRLSRKVLAGLGGIAALGIGAALIFALQTRDVERGGEELFSTENRATADGLAELPRDYAG
PVLGPALPGDLGKPILNARNRGEPVPAPGTPTVTAPAMDAAEQQRLAEEEAARLSGVFFQGGPRSAGGSDMGAGPAGQTP
GALGTMGQPGAAATQDRHAAFLGGAADRITVAPDRVEAPASPYLLQAGSVIPAALITGIRSDLPGQIIAQVTQPVYDSPT
GSILLIPQGTRVIGEYDASVTFGQRRVLLVWNRLIFPDGRSLVLERLPGADASGYAGLEDGVDYHWGELIKAAGLSTLLA
VGTELTAGDDDDRLVRAIRDGAQDTVDQAGQQIVQRQLLVAPTLTIRPGFPVRILVGRDLVFENAGER

Sequences:

>Translated_388_residues
MSDRDTAAAPLRLRAEPPRVTRLSRKVLAGLGGIAALGIGAALIFALQTRDVERGGEELFSTENRATADGLAELPRDYAG
PVLGPALPGDLGKPILNARNRGEPVPAPGTPTVTAPAMDAAEQQRLAEEEAARLSGVFFQGGPRSAGGSDMGAGPAGQTP
GALGTMGQPGAAATQDRHAAFLGGAADRITVAPDRVEAPASPYLLQAGSVIPAALITGIRSDLPGQIIAQVTQPVYDSPT
GSILLIPQGTRVIGEYDASVTFGQRRVLLVWNRLIFPDGRSLVLERLPGADASGYAGLEDGVDYHWGELIKAAGLSTLLA
VGTELTAGDDDDRLVRAIRDGAQDTVDQAGQQIVQRQLLVAPTLTIRPGFPVRILVGRDLVFENAGER
>Mature_387_residues
SDRDTAAAPLRLRAEPPRVTRLSRKVLAGLGGIAALGIGAALIFALQTRDVERGGEELFSTENRATADGLAELPRDYAGP
VLGPALPGDLGKPILNARNRGEPVPAPGTPTVTAPAMDAAEQQRLAEEEAARLSGVFFQGGPRSAGGSDMGAGPAGQTPG
ALGTMGQPGAAATQDRHAAFLGGAADRITVAPDRVEAPASPYLLQAGSVIPAALITGIRSDLPGQIIAQVTQPVYDSPTG
SILLIPQGTRVIGEYDASVTFGQRRVLLVWNRLIFPDGRSLVLERLPGADASGYAGLEDGVDYHWGELIKAAGLSTLLAV
GTELTAGDDDDRLVRAIRDGAQDTVDQAGQQIVQRQLLVAPTLTIRPGFPVRILVGRDLVFENAGER

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 40326; Mature: 40195

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRDTAAAPLRLRAEPPRVTRLSRKVLAGLGGIAALGIGAALIFALQTRDVERGGEELF
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
STENRATADGLAELPRDYAGPVLGPALPGDLGKPILNARNRGEPVPAPGTPTVTAPAMDA
CCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEECCCHHH
AEQQRLAEEEAARLSGVFFQGGPRSAGGSDMGAGPAGQTPGALGTMGQPGAAATQDRHAA
HHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
FLGGAADRITVAPDRVEAPASPYLLQAGSVIPAALITGIRSDLPGQIIAQVTQPVYDSPT
HHCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
GSILLIPQGTRVIGEYDASVTFGQRRVLLVWNRLIFPDGRSLVLERLPGADASGYAGLED
CCEEEEECCCEEEEECCCEEEECCCEEEEEEHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
GVDYHWGELIKAAGLSTLLAVGTELTAGDDDDRLVRAIRDGAQDTVDQAGQQIVQRQLLV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
APTLTIRPGFPVRILVGRDLVFENAGER
CCEEEECCCCCEEEEECCCEEECCCCCC
>Mature Secondary Structure 
SDRDTAAAPLRLRAEPPRVTRLSRKVLAGLGGIAALGIGAALIFALQTRDVERGGEELF
CCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
STENRATADGLAELPRDYAGPVLGPALPGDLGKPILNARNRGEPVPAPGTPTVTAPAMDA
CCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEECCCHHH
AEQQRLAEEEAARLSGVFFQGGPRSAGGSDMGAGPAGQTPGALGTMGQPGAAATQDRHAA
HHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
FLGGAADRITVAPDRVEAPASPYLLQAGSVIPAALITGIRSDLPGQIIAQVTQPVYDSPT
HHCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
GSILLIPQGTRVIGEYDASVTFGQRRVLLVWNRLIFPDGRSLVLERLPGADASGYAGLED
CCEEEEECCCEEEEECCCEEEECCCEEEEEEHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
GVDYHWGELIKAAGLSTLLAVGTELTAGDDDDRLVRAIRDGAQDTVDQAGQQIVQRQLLV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
APTLTIRPGFPVRILVGRDLVFENAGER
CCEEEECCCCCEEEEECCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]