| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119385920
Identifier: 119385920
GI number: 119385920
Start: 363267
End: 364064
Strand: Direct
Name: 119385920
Synonym: Pden_3198
Alternate gene names: NA
Gene position: 363267-364064 (Clockwise)
Preceding gene: 119385919
Following gene: 119385921
Centisome position: 21.0
GC content: 67.29
Gene sequence:
>798_bases ATGACGCGCAATACGACCGCTATCCCGCACCCCGTTCGCCGCATCGCCAGCACCACGGCACTCGCCGTCGCGCTCGCCAT CCCGCTGGCGCTGGCCCCTGTCCTCACGACACCGGCCCATGCCTTCTTCGGTGGTTTTGGGCGGATCGTCTACGACCCGA CCAACCATGCCGAGAACCTGCTGACCGCCGCCAGGTCGCTGGAGCAGATCAACAACCAGATCGCCTCGCTGCAGAACGAG GCGCAGATGCTGATCAACCAGGCCCGCGATCTCGCCAGCCTGCCGCATAGCTCGCTGCAGCAATTGCAGCAGAACGTCAC CCGCACCCAGCAGTTGCTCGACGAGGCCCAGAACATCGCCTTCGAGGTGCAGGAGGTCGATCAGGCTTTCGAGCGGGAAT ACGGCACGCCGGATCTCTCGACATCCGAGCAGCAACTGCTGGCCGATGCCCGGACGCGCTGGAGCAACACCATGGGCGGG CTTCAGGACGCCATGCGCGTCCAGTCCGGCGTCACCAACAACATCGAGGCGCAGCGGGCCGAGATGGCCGCGCTGGTCGA GCAGAGCCAGAATGCTGACGGCGCCTTGCAGGCCAGCCAGGCCGGCAACCAGTTGCTGGCCCTGCAATCGCAGCAACTGT CCGACCTCACCGCGCTCCTCGCCGCCACCGGCCGGGCCGAGGCACTGAGCGAGGCCGAGCGCTCGGCGGCGGCCGAACAG GGCCGCATCCAGCGCGAACGGTTTCTGACACCCGGCGCCGGCTACCAGCCCGGCAATGCCCGGATGTTCAACGACTGA
Upstream 100 bases:
>100_bases ACGGCCCTGCCGGTGACGAGATCGAGCCTGGCGACGCCGAGGCAGCATCCATCCCCGCAGAAGCAGGACCAGAACCAAAC GCAGACAAGGAGATCGAGCC
Downstream 100 bases:
>100_bases AAGCCCGAGGAGGCACCATCATGGAGGGCAAGGCGATGGTCCGGCTCATTGCCATCCTGTTCCTGGCGATCGTCATGACC GTGACGCTGATCCGCATGGA
Product: conjugal transfer protein TrbJ
Products: NA
Alternate protein names: P-Type Conjugative Transfer Protein TrbJ; Conjugal Transfer TrbJ Signal Peptide Protein; Conjugal Transfer Protein Trbj; Conjugal Transfer Protein; P-Type Conjugative Transfer Protein Trbj; Conjugative Transfer Protein TrbJ
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MTRNTTAIPHPVRRIASTTALAVALAIPLALAPVLTTPAHAFFGGFGRIVYDPTNHAENLLTAARSLEQINNQIASLQNE AQMLINQARDLASLPHSSLQQLQQNVTRTQQLLDEAQNIAFEVQEVDQAFEREYGTPDLSTSEQQLLADARTRWSNTMGG LQDAMRVQSGVTNNIEAQRAEMAALVEQSQNADGALQASQAGNQLLALQSQQLSDLTALLAATGRAEALSEAERSAAAEQ GRIQRERFLTPGAGYQPGNARMFND
Sequences:
>Translated_265_residues MTRNTTAIPHPVRRIASTTALAVALAIPLALAPVLTTPAHAFFGGFGRIVYDPTNHAENLLTAARSLEQINNQIASLQNE AQMLINQARDLASLPHSSLQQLQQNVTRTQQLLDEAQNIAFEVQEVDQAFEREYGTPDLSTSEQQLLADARTRWSNTMGG LQDAMRVQSGVTNNIEAQRAEMAALVEQSQNADGALQASQAGNQLLALQSQQLSDLTALLAATGRAEALSEAERSAAAEQ GRIQRERFLTPGAGYQPGNARMFND >Mature_264_residues TRNTTAIPHPVRRIASTTALAVALAIPLALAPVLTTPAHAFFGGFGRIVYDPTNHAENLLTAARSLEQINNQIASLQNEA QMLINQARDLASLPHSSLQQLQQNVTRTQQLLDEAQNIAFEVQEVDQAFEREYGTPDLSTSEQQLLADARTRWSNTMGGL QDAMRVQSGVTNNIEAQRAEMAALVEQSQNADGALQASQAGNQLLALQSQQLSDLTALLAATGRAEALSEAERSAAAEQG RIQRERFLTPGAGYQPGNARMFND
Specific function: Unknown
COG id: COG5314
COG function: function code U; Conjugal transfer/entry exclusion protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28658; Mature: 28527
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRNTTAIPHPVRRIASTTALAVALAIPLALAPVLTTPAHAFFGGFGRIVYDPTNHAENL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEECCCHHHHHH LTAARSLEQINNQIASLQNEAQMLINQARDLASLPHSSLQQLQQNVTRTQQLLDEAQNIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH FEVQEVDQAFEREYGTPDLSTSEQQLLADARTRWSNTMGGLQDAMRVQSGVTNNIEAQRA HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH EMAALVEQSQNADGALQASQAGNQLLALQSQQLSDLTALLAATGRAEALSEAERSAAAEQ HHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GRIQRERFLTPGAGYQPGNARMFND HHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TRNTTAIPHPVRRIASTTALAVALAIPLALAPVLTTPAHAFFGGFGRIVYDPTNHAENL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEECCCHHHHHH LTAARSLEQINNQIASLQNEAQMLINQARDLASLPHSSLQQLQQNVTRTQQLLDEAQNIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH FEVQEVDQAFEREYGTPDLSTSEQQLLADARTRWSNTMGGLQDAMRVQSGVTNNIEAQRA HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH EMAALVEQSQNADGALQASQAGNQLLALQSQQLSDLTALLAATGRAEALSEAERSAAAEQ HHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GRIQRERFLTPGAGYQPGNARMFND HHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA