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The map label for this gene is yjbJ [H]

Identifier: 119385907

GI number: 119385907

Start: 351220

End: 352026

Strand: Direct

Name: yjbJ [H]

Synonym: Pden_3185

Alternate gene names: 119385907

Gene position: 351220-352026 (Clockwise)

Preceding gene: 119385906

Following gene: 119385908

Centisome position: 20.3

GC content: 70.51

Gene sequence:

>807_bases
ATGCCGGTATCCGTCAAACACCGTGCCGGCGGGCAGGCCTGCGCCGCCCGCCAGGCCGCAATCCTTCTTCTTTCCGGCTT
GACATTCGCCGCCGTCCCGGCTGCCGTCCCGCTGGCGCAGACCGTGCAACCGGACGTGCAGGAAGCCAGCGATCCCTTCG
CCGCCCATGTCGCGGATGCCTCGCTGCGCTTTGGCATTCCGGCGCACTGGATCCGTGCCGTGCGCCATGTCGAAAGCCGC
GGCAATCCGCAGGCCGTCTCGCCCAAGGGCGCCATGGGCCTGATGCAGGTGATGCCGGAGACCTGGGCGGCGCTGCGCGC
CCGCCATGCTCTCGGCAGCGATCCGTTTGACCCGCGCGACAACATCCTCGCCGGTGCCGCCTATCTGCGCGAGATGCACG
ACCGCTACGGCAGCATCGCCGGCATGCTGGCGGCCTACAATGCCGGGCCGGGGCGCTACGACGAGCATCTGGTCTCGGGC
CGGGCCCTGCCGGCCGAGACCCGCGCCTATGTCGCCGCGCTGGCACCGATGCTCGGCGGCGAGCCGCTTTCCGGCATGAG
CTTCGCTGCTGCGCCACCGCGCGACTGGCGCGAGGCACCGCTGTTCATCGGCAGCCCGGATGCGGAACGAGTGCAGCCCG
GCGGTCTGTTCGTGCGCCGGTCCGATGCAGAACCTGCGCAGTCCGATGGCGCATTGGCTGCCGATCCGGAACCGCCTGCC
GAGCCGTCTGACACCGCTCAAAGCGCCCGCGCGCCGCAATCCGATGGCCTGTTCGTCCGCCGGTCGGACGCAGGAGCTGT
GCAATGA

Upstream 100 bases:

>100_bases
GCAGCCGATCCGCGCCCGGCTGTTCCAGTCCGACGAGCAGGGCCGGCACTGGGGTCTGCACTGGTCGCGCCCCAGAAAGC
GCGACGAGCGGGACTGAGCC

Downstream 100 bases:

>100_bases
AAAAATATTCCAATCGTCTCGCGGTGCGCGCAGTCGGAGGGCTTGGCAGATGAAGATCGCCTATGCGGACCCACCCTATA
TCGGCTGCGTGCATCTCTAC

Product: lytic transglycosylase, catalytic

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MPVSVKHRAGGQACAARQAAILLLSGLTFAAVPAAVPLAQTVQPDVQEASDPFAAHVADASLRFGIPAHWIRAVRHVESR
GNPQAVSPKGAMGLMQVMPETWAALRARHALGSDPFDPRDNILAGAAYLREMHDRYGSIAGMLAAYNAGPGRYDEHLVSG
RALPAETRAYVAALAPMLGGEPLSGMSFAAAPPRDWREAPLFIGSPDAERVQPGGLFVRRSDAEPAQSDGALAADPEPPA
EPSDTAQSARAPQSDGLFVRRSDAGAVQ

Sequences:

>Translated_268_residues
MPVSVKHRAGGQACAARQAAILLLSGLTFAAVPAAVPLAQTVQPDVQEASDPFAAHVADASLRFGIPAHWIRAVRHVESR
GNPQAVSPKGAMGLMQVMPETWAALRARHALGSDPFDPRDNILAGAAYLREMHDRYGSIAGMLAAYNAGPGRYDEHLVSG
RALPAETRAYVAALAPMLGGEPLSGMSFAAAPPRDWREAPLFIGSPDAERVQPGGLFVRRSDAEPAQSDGALAADPEPPA
EPSDTAQSARAPQSDGLFVRRSDAGAVQ
>Mature_267_residues
PVSVKHRAGGQACAARQAAILLLSGLTFAAVPAAVPLAQTVQPDVQEASDPFAAHVADASLRFGIPAHWIRAVRHVESRG
NPQAVSPKGAMGLMQVMPETWAALRARHALGSDPFDPRDNILAGAAYLREMHDRYGSIAGMLAAYNAGPGRYDEHLVSGR
ALPAETRAYVAALAPMLGGEPLSGMSFAAAPPRDWREAPLFIGSPDAERVQPGGLFVRRSDAEPAQSDGALAADPEPPAE
PSDTAQSARAPQSDGLFVRRSDAGAVQ

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 28064; Mature: 27933

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSVKHRAGGQACAARQAAILLLSGLTFAAVPAAVPLAQTVQPDVQEASDPFAAHVADA
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHCC
SLRFGIPAHWIRAVRHVESRGNPQAVSPKGAMGLMQVMPETWAALRARHALGSDPFDPRD
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
NILAGAAYLREMHDRYGSIAGMLAAYNAGPGRYDEHLVSGRALPAETRAYVAALAPMLGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
EPLSGMSFAAAPPRDWREAPLFIGSPDAERVQPGGLFVRRSDAEPAQSDGALAADPEPPA
CCCCCCCCCCCCCCCHHHCCEEECCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
EPSDTAQSARAPQSDGLFVRRSDAGAVQ
CCCHHHHHHCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
PVSVKHRAGGQACAARQAAILLLSGLTFAAVPAAVPLAQTVQPDVQEASDPFAAHVADA
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHCC
SLRFGIPAHWIRAVRHVESRGNPQAVSPKGAMGLMQVMPETWAALRARHALGSDPFDPRD
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
NILAGAAYLREMHDRYGSIAGMLAAYNAGPGRYDEHLVSGRALPAETRAYVAALAPMLGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
EPLSGMSFAAAPPRDWREAPLFIGSPDAERVQPGGLFVRRSDAEPAQSDGALAADPEPPA
CCCCCCCCCCCCCCCHHHCCEEECCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
EPSDTAQSARAPQSDGLFVRRSDAGAVQ
CCCHHHHHHCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]