Click here to switch to the map view.

The map label for this gene is hupC [H]

Identifier: 119385822

GI number: 119385822

Start: 286684

End: 287430

Strand: Direct

Name: hupC [H]

Synonym: Pden_3100

Alternate gene names: 119385822

Gene position: 286684-287430 (Clockwise)

Preceding gene: 119385821

Following gene: 119385823

Centisome position: 16.57

GC content: 57.43

Gene sequence:

>747_bases
ATGAGCGACATCCATCCCGGCGATGACCATATCTTCGAGGGCCGCCCTCTGGGCGCCCCCCATCAGGTTACCCGGCAAAC
CTCGGTCTATGTCTATGAGGCGCCGGTTCGCATTTGGCACTGGATCAACGCGGCCTGCATCATGGTCTTGTGCGTGACCG
GCTGGCTTATCGGCAGCCCGCCGCCTTCGATGCAGATCGCTGAAGCCTATGACCAGTTCGTCTTCGGCTATATCCGCTTT
GCCCATTTCGCGGCGGCTATGATCCTGACGGTGGGCTTTTTCGGCCGCATCTACTGGGCGCTGATCGGCAACCACCATGC
AAAGCAGCTTTTCTATGTGCCGATCTTCTCTCGCCGGTTCTGGGGAGAGTTACTGTTCGAGCTGCGCTGGTACTTCTTTC
TGGAAAAAGAGCCGAAGAAATATGTCGGCCACAACCCGCTGGCGCAGCTTGCGATGTTTCTGTTCATGACGGTCGGTCTG
ACCTTCATGATCGTCACCGGATTTGCGCTGTATGCCGAAGGGGCGGGCAAGGACAGCATGTTCTATGCCGTCTTCGGCTG
GGTCCAGGACCTTGTTCAGAACACCCAGCGCCTGCACACGCTGCACCATATCGGCATGTGGTGGATCGTGATCTTCATGA
TCATCCATATCTATGTGGCGATCCGCGAAGACATCATGTCGCGCCAGTCGATGGTCTCGACGATGATCTCGGGACACCGC
ACCTTCAAGGATGATCGCCCCGACTGA

Upstream 100 bases:

>100_bases
CGCACGATCTCGAACGCCACGGCGGCCAGAATGGTGCAGGCGGCAACCGGCACCGGGATCGCTGTGGCGGGCCTTGCCCT
GATGGCCGCCGGGTGATGCC

Downstream 100 bases:

>100_bases
ACGCGGCTGGCAGCAACTGGAAGGATCGTTTCCGGTTTCAGAGCCAGACGGCAGGTCACTTGCCGCACCATATCCCGAAA
TCCCGCCCGCATTGGCGGGA

Product: Ni/Fe-hydrogenase, b-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSDIHPGDDHIFEGRPLGAPHQVTRQTSVYVYEAPVRIWHWINAACIMVLCVTGWLIGSPPPSMQIAEAYDQFVFGYIRF
AHFAAAMILTVGFFGRIYWALIGNHHAKQLFYVPIFSRRFWGELLFELRWYFFLEKEPKKYVGHNPLAQLAMFLFMTVGL
TFMIVTGFALYAEGAGKDSMFYAVFGWVQDLVQNTQRLHTLHHIGMWWIVIFMIIHIYVAIREDIMSRQSMVSTMISGHR
TFKDDRPD

Sequences:

>Translated_248_residues
MSDIHPGDDHIFEGRPLGAPHQVTRQTSVYVYEAPVRIWHWINAACIMVLCVTGWLIGSPPPSMQIAEAYDQFVFGYIRF
AHFAAAMILTVGFFGRIYWALIGNHHAKQLFYVPIFSRRFWGELLFELRWYFFLEKEPKKYVGHNPLAQLAMFLFMTVGL
TFMIVTGFALYAEGAGKDSMFYAVFGWVQDLVQNTQRLHTLHHIGMWWIVIFMIIHIYVAIREDIMSRQSMVSTMISGHR
TFKDDRPD
>Mature_247_residues
SDIHPGDDHIFEGRPLGAPHQVTRQTSVYVYEAPVRIWHWINAACIMVLCVTGWLIGSPPPSMQIAEAYDQFVFGYIRFA
HFAAAMILTVGFFGRIYWALIGNHHAKQLFYVPIFSRRFWGELLFELRWYFFLEKEPKKYVGHNPLAQLAMFLFMTVGLT
FMIVTGFALYAEGAGKDSMFYAVFGWVQDLVQNTQRLHTLHHIGMWWIVIFMIIHIYVAIREDIMSRQSMVSTMISGHRT
FKDDRPD

Specific function: Probable b-type cytochrome [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=224, Percent_Identity=45.9821428571429, Blast_Score=201, Evalue=3e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 28864; Mature: 28733

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00883 NI_HGENASE_CYTB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCC
>Mature Secondary Structure 
SDIHPGDDHIFEGRPLGAPHQVTRQTSVYVYEAPVRIWHWINAACIMVLCVTGWLIGSP
CCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC
PPSMQIAEAYDQFVFGYIRFAHFAAAMILTVGFFGRIYWALIGNHHAKQLFYVPIFSRRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEHHHHHHH
WGELLFELRWYFFLEKEPKKYVGHNPLAQLAMFLFMTVGLTFMIVTGFALYAEGAGKDSM
HHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
FYAVFGWVQDLVQNTQRLHTLHHIGMWWIVIFMIIHIYVAIREDIMSRQSMVSTMISGHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TFKDDRPD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2094292; 3067084; 1791762 [H]