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The map label for this gene is ylmD [H]

Identifier: 119358476

GI number: 119358476

Start: 3101819

End: 3102589

Strand: Direct

Name: ylmD [H]

Synonym: Cpha266_2712

Alternate gene names: 119358476

Gene position: 3101819-3102589 (Clockwise)

Preceding gene: 119358466

Following gene: 119358478

Centisome position: 98.98

GC content: 54.47

Gene sequence:

>771_bases
ATGAAAAAAAAGCCTTTTATACGCCCCGGATATATCGTTCCCGCGCTGTTTTCCGGCTTTGGCAATCTTGTTGCGGGTCA
ATCGCTCCGTACCGGGGGCACAAGCCTTCCTCCCTACGCGTCGCTGAATGCAGGCTTCGCTACGGGCGACAATCCCGCCG
TGATAAACAATAACATTGCGCTCCTGTGCGATGAACTTGCCATCGAACCACGACAATTGGCATGGTCTGAACAGGTTCAC
GGGACGTCGATTCTTGAGGTGACTGCGCCGGGGGCCTATCGAGGTTATGATGCGCTGATCACCTCTGTTGCCGATATTTA
CCTTTCGATCTTTACTGCCGACTGCTATCCCGTTCTTGTTTATGATCCGGTTCATCTGGCCGTCGGGGCTGTCCATGCGG
GATGGAAGGGCACTGCCGGAGAGATTGTCGTAAAAACCGTTTCGCTCATGCAACGCAGATTCAATACCTGCCCGGAGAAC
TGTCTGGCCTATATCGGTACCGGAATTTCGCAACCGGCTTATGAGGTAAGTCGTGAAACGTCGGTTCTTTTTCCAGCGAG
CTGCCGTATCGCGTCGCCGGGAGGCGACGACGCGTTCATGCTTGATCTTGCGCAGGCCAATCATGAGCAGCTCCTCTCTT
CGGGAATCCCGGACAAGAACATCGAACGATCGCCGTTCTGCACCTGTCGCAATGCCGACCTCTTTTATTCTTATCGGCGC
GATGAGGGGAAAACCGGTCGGATGGTCAGCCTGATAGGCATCAGAGCCTGA

Upstream 100 bases:

>100_bases
TAACGATAGCAAAAGGTTCTTTTTACTCGTCCGTACCGAAGGGATTTACGGCATGTTCGGATGATTTTATTCACTCAAGT
TATCATGTTTATCGGCTATT

Downstream 100 bases:

>100_bases
CGGAACTCTTTCGGACGGCGATAAGGGCGGTTCCCGTTTTTTCTTCAAGCTCGCGAAGCCTGGCGAGCTGTTCATCGCTC
AGATCGTCAGCAAGAACATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKKKPFIRPGYIVPALFSGFGNLVAGQSLRTGGTSLPPYASLNAGFATGDNPAVINNNIALLCDELAIEPRQLAWSEQVH
GTSILEVTAPGAYRGYDALITSVADIYLSIFTADCYPVLVYDPVHLAVGAVHAGWKGTAGEIVVKTVSLMQRRFNTCPEN
CLAYIGTGISQPAYEVSRETSVLFPASCRIASPGGDDAFMLDLAQANHEQLLSSGIPDKNIERSPFCTCRNADLFYSYRR
DEGKTGRMVSLIGIRA

Sequences:

>Translated_256_residues
MKKKPFIRPGYIVPALFSGFGNLVAGQSLRTGGTSLPPYASLNAGFATGDNPAVINNNIALLCDELAIEPRQLAWSEQVH
GTSILEVTAPGAYRGYDALITSVADIYLSIFTADCYPVLVYDPVHLAVGAVHAGWKGTAGEIVVKTVSLMQRRFNTCPEN
CLAYIGTGISQPAYEVSRETSVLFPASCRIASPGGDDAFMLDLAQANHEQLLSSGIPDKNIERSPFCTCRNADLFYSYRR
DEGKTGRMVSLIGIRA
>Mature_256_residues
MKKKPFIRPGYIVPALFSGFGNLVAGQSLRTGGTSLPPYASLNAGFATGDNPAVINNNIALLCDELAIEPRQLAWSEQVH
GTSILEVTAPGAYRGYDALITSVADIYLSIFTADCYPVLVYDPVHLAVGAVHAGWKGTAGEIVVKTVSLMQRRFNTCPEN
CLAYIGTGISQPAYEVSRETSVLFPASCRIASPGGDDAFMLDLAQANHEQLLSSGIPDKNIERSPFCTCRNADLFYSYRR
DEGKTGRMVSLIGIRA

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=267, Percent_Identity=24.7191011235955, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI190194372, Length=267, Percent_Identity=24.7191011235955, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1788945, Length=236, Percent_Identity=36.4406779661017, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 27557; Mature: 27557

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKPFIRPGYIVPALFSGFGNLVAGQSLRTGGTSLPPYASLNAGFATGDNPAVINNNIA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCE
LLCDELAIEPRQLAWSEQVHGTSILEVTAPGAYRGYDALITSVADIYLSIFTADCYPVLV
EEEHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
YDPVHLAVGAVHAGWKGTAGEIVVKTVSLMQRRFNTCPENCLAYIGTGISQPAYEVSRET
ECHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCCCC
SVLFPASCRIASPGGDDAFMLDLAQANHEQLLSSGIPDKNIERSPFCTCRNADLFYSYRR
EEEECCCEEEECCCCCCEEEEEEHHCCHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEC
DEGKTGRMVSLIGIRA
CCCCCCCEEEEEEECC
>Mature Secondary Structure
MKKKPFIRPGYIVPALFSGFGNLVAGQSLRTGGTSLPPYASLNAGFATGDNPAVINNNIA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCE
LLCDELAIEPRQLAWSEQVHGTSILEVTAPGAYRGYDALITSVADIYLSIFTADCYPVLV
EEEHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
YDPVHLAVGAVHAGWKGTAGEIVVKTVSLMQRRFNTCPENCLAYIGTGISQPAYEVSRET
ECHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCCCC
SVLFPASCRIASPGGDDAFMLDLAQANHEQLLSSGIPDKNIERSPFCTCRNADLFYSYRR
EEEECCCEEEECCCCCCEEEEEEHHCCHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEC
DEGKTGRMVSLIGIRA
CCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]