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The map label for this gene is rlpA [H]

Identifier: 119358461

GI number: 119358461

Start: 3089816

End: 3090325

Strand: Direct

Name: rlpA [H]

Synonym: Cpha266_2697

Alternate gene names: 119358461

Gene position: 3089816-3090325 (Clockwise)

Preceding gene: 119358448

Following gene: 119358464

Centisome position: 98.59

GC content: 50.78

Gene sequence:

>510_bases
ATGCGCAGATTTTTTTTAGCGGCCTCTGCCGTGCTTTTGATCGGCCTTGGCTCATGCAAATCATCCCTGCCTCCCTATAA
GGGAACGGATACTCCCAGGCTCTCGCCTGCTGAAGCTTTTCGGCTCGGAAAAATCAAGAACACGCCTTATGTGATCAATG
GAAAGTTATATATTCCAATGAGTTATGAACAGGCGACAGCCTATGAGGAAACCGGCATCGCTTCATGGTACGGCCAGGAA
ACCCTTCTTCAGCATAACGGGCAGGCGACAGCGTATGGCGAGCCTTTTTATCCGGATAAACCAAGCGCCGCTCACAAGTA
TCTGCCTCTCCCCTCCATTGTCCGCGTTACCAATCTCGATACAAGCGCGTCCATTGAGGTTCGGGTCAACGATCGGGGAC
CTTTTGTCGACAACCGGGTTATCGATCTGAGCGCCGAAGCGGCAAAACAGCTCGGGTTTTATGAAAAGGGTACGGCAAGG
GTTAAACTTGAAGTTATTTCGAAGCCATGA

Upstream 100 bases:

>100_bases
GTAAATTTGTTGCTTAAATATATTTCCGCTCAGTGATAATTCCCTGCATTTTGCTATTTTTTTCTGCGTACCTTGACAAG
AACACTTCCAAGCCTTTGTT

Downstream 100 bases:

>100_bases
GAGGAGATCGGGATGCAACCTGTATTTAAACGTCGATCTCCTGCCCGGCTGGTTACGACAACAACGTTTCGACAATCCTC
TTTTACGCGTCGCTCTCTTT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRRFFLAASAVLLIGLGSCKSSLPPYKGTDTPRLSPAEAFRLGKIKNTPYVINGKLYIPMSYEQATAYEETGIASWYGQE
TLLQHNGQATAYGEPFYPDKPSAAHKYLPLPSIVRVTNLDTSASIEVRVNDRGPFVDNRVIDLSAEAAKQLGFYEKGTAR
VKLEVISKP

Sequences:

>Translated_169_residues
MRRFFLAASAVLLIGLGSCKSSLPPYKGTDTPRLSPAEAFRLGKIKNTPYVINGKLYIPMSYEQATAYEETGIASWYGQE
TLLQHNGQATAYGEPFYPDKPSAAHKYLPLPSIVRVTNLDTSASIEVRVNDRGPFVDNRVIDLSAEAAKQLGFYEKGTAR
VKLEVISKP
>Mature_169_residues
MRRFFLAASAVLLIGLGSCKSSLPPYKGTDTPRLSPAEAFRLGKIKNTPYVINGKLYIPMSYEQATAYEETGIASWYGQE
TLLQHNGQATAYGEPFYPDKPSAAHKYLPLPSIVRVTNLDTSASIEVRVNDRGPFVDNRVIDLSAEAAKQLGFYEKGTAR
VKLEVISKP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=150, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 18600; Mature: 18600

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFFLAASAVLLIGLGSCKSSLPPYKGTDTPRLSPAEAFRLGKIKNTPYVINGKLYIPM
CCEEHHHHHEEEEEECCCHHCCCCCCCCCCCCCCCHHHHHEECCCCCCCEEECCEEEEEE
SYEQATAYEETGIASWYGQETLLQHNGQATAYGEPFYPDKPSAAHKYLPLPSIVRVTNLD
CCHHHHHHHHCCCCHHCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC
TSASIEVRVNDRGPFVDNRVIDLSAEAAKQLGFYEKGTARVKLEVISKP
CCCEEEEEECCCCCCCCCEEEEECHHHHHHCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MRRFFLAASAVLLIGLGSCKSSLPPYKGTDTPRLSPAEAFRLGKIKNTPYVINGKLYIPM
CCEEHHHHHEEEEEECCCHHCCCCCCCCCCCCCCCHHHHHEECCCCCCCEEECCEEEEEE
SYEQATAYEETGIASWYGQETLLQHNGQATAYGEPFYPDKPSAAHKYLPLPSIVRVTNLD
CCHHHHHHHHCCCCHHCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC
TSASIEVRVNDRGPFVDNRVIDLSAEAAKQLGFYEKGTARVKLEVISKP
CCCEEEEEECCCCCCCCCEEEEECHHHHHHCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]