| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is traN [H]
Identifier: 119358368
GI number: 119358368
Start: 2981165
End: 2981905
Strand: Reverse
Name: traN [H]
Synonym: Cpha266_2600
Alternate gene names: 119358368
Gene position: 2981905-2981165 (Counterclockwise)
Preceding gene: 119358369
Following gene: 119358367
Centisome position: 95.15
GC content: 44.8
Gene sequence:
>741_bases ATGAATTCAGCTCCCGACGAGGAACAGGTGAATATGATAACGCGGTATCCATGGGATGTATTTCCACCGGTTTGGATTCA TGCTAATGAATCAACGGTAAAACAGCATCCTTCATATCTTGCGGCCAAGTCAGGTGACCCTGATGCAGCATATCTCCTGG TAGATGCTTTGTTGAATCCAATAATTGTTGAACAATTGGCTGAAACATTTGCCCGGCAAAAACCAGTATTGGTTTCAGCA CATGCAGTGGAAGGTTCTGGGGTAAACGCCATACCGGAAGCATTGGCTGATATTCTTGCCCAACAGTTAGGCTGGCCTAC AGATATGAGTATAGTACAGATAAATATTGTGTCGCATACAGGAGCTGATGGTTTTTCTCGTTTGGCGAGGCAGGCGAAGT TTGATGGGGATATATTGGCAGGCAAGCCATACCTGTTAATAGATGATTTTATAGGTCAAGGTGGGACACTGGCCAACCTG CGATCACATATTATGAGCAGAGGTGGTAGCGTGCTGGGTGCAACAGTGTTGACAGGAAAGCCATATTCTGCTAAAATGGC TTTGGATGGAGTGACACTTGAACAATTGAGATTAAAACATGGACAACGACTTGAAAATTGGTGGAATCACAGGTTCGGCT TCAAATTTGACTGCCTTACGGAGTCTGAAGCACGTTATTTGCTTAACACCCCGGATGTTGACCGCATCCGAAATAAAATT ATTGCGGCAGTCCAAGGTTGA
Upstream 100 bases:
>100_bases TGAGCAATGAAGCGCCTGTTGCGTAGCAAGGCTAACTTTGAGGTAATTGAAGGTTTTTTATGCGAGCTGGGGCTGCTTTG AATCTCTATGTTGCCCATAA
Downstream 100 bases:
>100_bases AATTGCTCAGCGGGTCAGCGAGTTGGCTGGTTTACGCAGAGGGTCAAACCAGTCTGCTGAAAGGGCAACTGAAACATCGT TGTTGAGTGCTGCCAAAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MNSAPDEEQVNMITRYPWDVFPPVWIHANESTVKQHPSYLAAKSGDPDAAYLLVDALLNPIIVEQLAETFARQKPVLVSA HAVEGSGVNAIPEALADILAQQLGWPTDMSIVQINIVSHTGADGFSRLARQAKFDGDILAGKPYLLIDDFIGQGGTLANL RSHIMSRGGSVLGATVLTGKPYSAKMALDGVTLEQLRLKHGQRLENWWNHRFGFKFDCLTESEARYLLNTPDVDRIRNKI IAAVQG
Sequences:
>Translated_246_residues MNSAPDEEQVNMITRYPWDVFPPVWIHANESTVKQHPSYLAAKSGDPDAAYLLVDALLNPIIVEQLAETFARQKPVLVSA HAVEGSGVNAIPEALADILAQQLGWPTDMSIVQINIVSHTGADGFSRLARQAKFDGDILAGKPYLLIDDFIGQGGTLANL RSHIMSRGGSVLGATVLTGKPYSAKMALDGVTLEQLRLKHGQRLENWWNHRFGFKFDCLTESEARYLLNTPDVDRIRNKI IAAVQG >Mature_246_residues MNSAPDEEQVNMITRYPWDVFPPVWIHANESTVKQHPSYLAAKSGDPDAAYLLVDALLNPIIVEQLAETFARQKPVLVSA HAVEGSGVNAIPEALADILAQQLGWPTDMSIVQINIVSHTGADGFSRLARQAKFDGDILAGKPYLLIDDFIGQGGTLANL RSHIMSRGGSVLGATVLTGKPYSAKMALDGVTLEQLRLKHGQRLENWWNHRFGFKFDCLTESEARYLLNTPDVDRIRNKI IAAVQG
Specific function: Unknown
COG id: COG2369
COG function: function code S; Uncharacterized protein, homolog of phage Mu protein gp30
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1407 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: NA
Molecular weight: Translated: 26999; Mature: 26999
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSAPDEEQVNMITRYPWDVFPPVWIHANESTVKQHPSYLAAKSGDPDAAYLLVDALLNP CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHH IIVEQLAETFARQKPVLVSAHAVEGSGVNAIPEALADILAQQLGWPTDMSIVQINIVSHT HHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC GADGFSRLARQAKFDGDILAGKPYLLIDDFIGQGGTLANLRSHIMSRGGSVLGATVLTGK CCHHHHHHHHHHCCCCCEECCCCEEEEEHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCC PYSAKMALDGVTLEQLRLKHGQRLENWWNHRFGFKFDCLTESEARYLLNTPDVDRIRNKI CCCCEEEECCCCHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCEEEECCCCHHHHHHHH IAAVQG HHHCCC >Mature Secondary Structure MNSAPDEEQVNMITRYPWDVFPPVWIHANESTVKQHPSYLAAKSGDPDAAYLLVDALLNP CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHH IIVEQLAETFARQKPVLVSAHAVEGSGVNAIPEALADILAQQLGWPTDMSIVQINIVSHT HHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC GADGFSRLARQAKFDGDILAGKPYLLIDDFIGQGGTLANLRSHIMSRGGSVLGATVLTGK CCHHHHHHHHHHCCCCCEECCCCEEEEEHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCC PYSAKMALDGVTLEQLRLKHGQRLENWWNHRFGFKFDCLTESEARYLLNTPDVDRIRNKI CCCCEEEECCCCHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCEEEECCCCHHHHHHHH IAAVQG HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA