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The map label for this gene is cspG [H]

Identifier: 119358122

GI number: 119358122

Start: 2739487

End: 2739699

Strand: Reverse

Name: cspG [H]

Synonym: Cpha266_2354

Alternate gene names: 119358122

Gene position: 2739699-2739487 (Counterclockwise)

Preceding gene: 119358123

Following gene: 119358120

Centisome position: 87.42

GC content: 44.6

Gene sequence:

>213_bases
ATGGGAAATCAGGTTGAAGGAACGGTAAAGTGGTTCAATGAAGAAAAAGGGTACGGCTTTATTGCTCAGAAAGAGGGCAA
GGACGTTTTTGTCCATCACAGCGCAATAAAGGGTTCCGGCAGAAAAAGTCTTACAGAAGGTCAGAAAGTCTTGATGGAAG
TTGTTCAGGGGGCAAAAGGACTTCAGGCAGAAAACGTTACACCTTTAGGCTGA

Upstream 100 bases:

>100_bases
ATTGCGTTAAAGTAACTAAATTGTCAGCTAAGGGGCACGGTATGTCACTGTGTTATATAACCAGCCTGTTTCGGCGAAAC
GGCAAAAAAAAGAGGAAGAC

Downstream 100 bases:

>100_bases
GTTCATAAGGCCTTTGTGTTGTGTGTTGTTAACCGTCAGGGTCAGAACGTTAAAATTCTGATCCTGACGGTTTTCTGGCG
TTATACGGTTAATCCATCAC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MGNQVEGTVKWFNEEKGYGFIAQKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKGLQAENVTPLG

Sequences:

>Translated_70_residues
MGNQVEGTVKWFNEEKGYGFIAQKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKGLQAENVTPLG
>Mature_69_residues
GNQVEGTVKWFNEEKGYGFIAQKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKGLQAENVTPLG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=72, Percent_Identity=47.2222222222222, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI224586884, Length=72, Percent_Identity=47.2222222222222, Blast_Score=62, Evalue=9e-11,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=55.8823529411765, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=57.1428571428571, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=56.7164179104478, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=53.7313432835821, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=52.8571428571429, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=48.5714285714286, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=46.1538461538462, Blast_Score=62, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17533635, Length=69, Percent_Identity=43.4782608695652, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7575; Mature: 7444

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNQVEGTVKWFNEEKGYGFIAQKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKG
CCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
LQAENVTPLG
CCCCCCCCCC
>Mature Secondary Structure 
GNQVEGTVKWFNEEKGYGFIAQKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKG
CCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
LQAENVTPLG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]