| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is bchE [H]
Identifier: 119358086
GI number: 119358086
Start: 2656862
End: 2658502
Strand: Direct
Name: bchE [H]
Synonym: Cpha266_2315
Alternate gene names: 119358086
Gene position: 2656862-2658502 (Clockwise)
Preceding gene: 119358085
Following gene: 119358106
Centisome position: 84.78
GC content: 50.15
Gene sequence:
>1641_bases ATGAAAATACTGATGGTTCAGCCAAATTATCACTCAGGCGGTGCTGAAATTGCCGGAAACTGGACACCAAGCTGGGTTGC CTATATCGGCGGTGCCTTGAAACAGGCAGGATTCGATCAGATTCGATTTGTCGATGCAATGGCAGACGATCTGCCAGACG ATCAGATTGAGGAGATCATCCGTTCCAACAAGCCGGATGTGGTTATGACAACCAATATCACCCCGTCGATTTTCAAGGCA CAGGATATCATGAAAATCGCAAAAAAGGTGAATCCTAAAATTCGCACCCTTATGGGCGGTATTCACTCAACCTTCATGTA CCCGCAGGTGCTGAGCGAAGCCCCCGAAACTGACTATGTTATCCGTGGCGAAGGCGAAGAGGTTGCCGTCAACCTTATCC GATCGATCGCCAATGGCACCGACAAACAGGATCGTGCCGAAATTACCGGTATCGCCTACGTTGACGATGAGGGTAAAGTC TTTGCAACCCCTGCTCACCCCGTTATTGAGAATCTCGACACCCTCTCCCCCGACTGGAGCCTCTACGACTGGGATAAATA CATCTACACACCGCTGAACTGTCGGCTTGCCGTGCCGAACTTCGCAAGAGGATGCCCCTTTACCTGCACATTCTGCTCAC AATGGCAGTTCTGGCGCCGCTACCGCGCACGCAGCCCGAAACATTTCGTTGATGAAATCGAGATTCTGGTAAAAAAATAC AACGTCGGCTTCTTTATTCTTGCCGACGAAGAACCGACCATCAACAAACAGAAGTTTGTCACTCTCTGTCAGGAGCTGAT CGACCGAAAACTCGGCGTTACCTGGGGCATCAATACCCGTGTAACCGATATCATGCGTGATGAAGACCTGTTGCCGTTCT TCCGCAAAGCGGGTCTGGTGCACGTTTCGCTCGGCACCGAGGCCGCAAGCCAGATGAACCTCAACCGGTTCCGCAAGGAA ACCACCATCGAGGAAAACAAATTCGCAATCAAGATGCTCCAGAAGAACGGGATCGTTGCAGAAGCGCAATTTGTTATGGG CCTTGAACACGAAACACCGGAAACCATTGAAGAAACCTATCAGCTCTGCAAAGACTGGGATCCTGACATGGCAAACTGGA CAATTTACACCCCATGGCCCTTCTCGGATCTCTTCAAAGAGCTTGGCGACAGGGTTGAGGTGCGCGACTATTCAAAATAC AACTTCGTTTCGCCGATCATCAAACCGGACAATATGGAGCGTGAAGATGTGCTCAAGGGAGTACTGAAATCATATGCCCG TTTCTACGCCCGCAAAACATTCTTCAGCTACCCGTGGATCAAGGATCCCTATGTTCGCAAATACATGCTCGGGTGCCTGA AAGCGTTTGCTCAGACCACCATCACCAAACGGTTCTACGACATCGACCGCGTCAAGACAAAAAACCGTAAAATCGAAATC GATCTCGGTTTTGACAAATCAAGAATCCTGACGCAGGAAGAAGTAAAGAACCTCAAGGAACTCCGTCCGGAAATGGTTGC CGATATGAGCTTCGGTCTTAAGGAGGCTGGATACCAGCGTGAGCATGACGAGCACGACTGGGATGCTTTCGACGAAACGA CCATCAAGGATCGTACGTCCTCAACCATACGTAACTGCTGA
Upstream 100 bases:
>100_bases GTAAATTAAGAGTTCATGATTTTTTTGGTGAGAAACATGGTTACTTGTTTCCTGAACTCTTGCCTTATTTCGTAAAAATA TATCTGGAGGGTGGATACCG
Downstream 100 bases:
>100_bases TCGCAAGCGACTCTTGAATGAACTGTAAACAAAAAAACCTCCGTAAATCCGGAGGTTTTTTTGTTAGATGCAAAATCCAG TACTATTTAACAGGTACCTC
Product: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
Products: NA
Alternate protein names: Anaerobic Mg-protoporphyrin IX monomethyl ester oxidative cyclase [H]
Number of amino acids: Translated: 546; Mature: 546
Protein sequence:
>546_residues MKILMVQPNYHSGGAEIAGNWTPSWVAYIGGALKQAGFDQIRFVDAMADDLPDDQIEEIIRSNKPDVVMTTNITPSIFKA QDIMKIAKKVNPKIRTLMGGIHSTFMYPQVLSEAPETDYVIRGEGEEVAVNLIRSIANGTDKQDRAEITGIAYVDDEGKV FATPAHPVIENLDTLSPDWSLYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKY NVGFFILADEEPTINKQKFVTLCQELIDRKLGVTWGINTRVTDIMRDEDLLPFFRKAGLVHVSLGTEAASQMNLNRFRKE TTIEENKFAIKMLQKNGIVAEAQFVMGLEHETPETIEETYQLCKDWDPDMANWTIYTPWPFSDLFKELGDRVEVRDYSKY NFVSPIIKPDNMEREDVLKGVLKSYARFYARKTFFSYPWIKDPYVRKYMLGCLKAFAQTTITKRFYDIDRVKTKNRKIEI DLGFDKSRILTQEEVKNLKELRPEMVADMSFGLKEAGYQREHDEHDWDAFDETTIKDRTSSTIRNC
Sequences:
>Translated_546_residues MKILMVQPNYHSGGAEIAGNWTPSWVAYIGGALKQAGFDQIRFVDAMADDLPDDQIEEIIRSNKPDVVMTTNITPSIFKA QDIMKIAKKVNPKIRTLMGGIHSTFMYPQVLSEAPETDYVIRGEGEEVAVNLIRSIANGTDKQDRAEITGIAYVDDEGKV FATPAHPVIENLDTLSPDWSLYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKY NVGFFILADEEPTINKQKFVTLCQELIDRKLGVTWGINTRVTDIMRDEDLLPFFRKAGLVHVSLGTEAASQMNLNRFRKE TTIEENKFAIKMLQKNGIVAEAQFVMGLEHETPETIEETYQLCKDWDPDMANWTIYTPWPFSDLFKELGDRVEVRDYSKY NFVSPIIKPDNMEREDVLKGVLKSYARFYARKTFFSYPWIKDPYVRKYMLGCLKAFAQTTITKRFYDIDRVKTKNRKIEI DLGFDKSRILTQEEVKNLKELRPEMVADMSFGLKEAGYQREHDEHDWDAFDETTIKDRTSSTIRNC >Mature_546_residues MKILMVQPNYHSGGAEIAGNWTPSWVAYIGGALKQAGFDQIRFVDAMADDLPDDQIEEIIRSNKPDVVMTTNITPSIFKA QDIMKIAKKVNPKIRTLMGGIHSTFMYPQVLSEAPETDYVIRGEGEEVAVNLIRSIANGTDKQDRAEITGIAYVDDEGKV FATPAHPVIENLDTLSPDWSLYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKY NVGFFILADEEPTINKQKFVTLCQELIDRKLGVTWGINTRVTDIMRDEDLLPFFRKAGLVHVSLGTEAASQMNLNRFRKE TTIEENKFAIKMLQKNGIVAEAQFVMGLEHETPETIEETYQLCKDWDPDMANWTIYTPWPFSDLFKELGDRVEVRDYSKY NFVSPIIKPDNMEREDVLKGVLKSYARFYARKTFFSYPWIKDPYVRKYMLGCLKAFAQTTITKRFYDIDRVKTKNRKIEI DLGFDKSRILTQEEVKNLKELRPEMVADMSFGLKEAGYQREHDEHDWDAFDETTIKDRTSSTIRNC
Specific function: Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis in anaerobic conditions. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-prot
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011772 - InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 63275; Mature: 63275
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILMVQPNYHSGGAEIAGNWTPSWVAYIGGALKQAGFDQIRFVDAMADDLPDDQIEEII CEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH RSNKPDVVMTTNITPSIFKAQDIMKIAKKVNPKIRTLMGGIHSTFMYPQVLSEAPETDYV HCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE IRGEGEEVAVNLIRSIANGTDKQDRAEITGIAYVDDEGKVFATPAHPVIENLDTLSPDWS EECCCHHHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCEEECCCCHHHHHHHCCCCCCC LYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKY EEECCCEEECCCCEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC NVGFFILADEEPTINKQKFVTLCQELIDRKLGVTWGINTRVTDIMRDEDLLPFFRKAGLV CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEECCCCHHHHHHCCCCHHHHHHHCCEE HVSLGTEAASQMNLNRFRKETTIEENKFAIKMLQKNGIVAEAQFVMGLEHETPETIEETY EEECCCHHHHHHHHHHHHHHCCCCCCHHEEEEHHHCCCEEEEHHHHCCCCCCHHHHHHHH QLCKDWDPDMANWTIYTPWPFSDLFKELGDRVEVRDYSKYNFVSPIIKPDNMEREDVLKG HHHHCCCCCCCCEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH VLKSYARFYARKTFFSYPWIKDPYVRKYMLGCLKAFAQTTITKRFYDIDRVKTKNRKIEI HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE DLGFDKSRILTQEEVKNLKELRPEMVADMSFGLKEAGYQREHDEHDWDAFDETTIKDRTS EECCCHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH STIRNC HHHCCC >Mature Secondary Structure MKILMVQPNYHSGGAEIAGNWTPSWVAYIGGALKQAGFDQIRFVDAMADDLPDDQIEEII CEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH RSNKPDVVMTTNITPSIFKAQDIMKIAKKVNPKIRTLMGGIHSTFMYPQVLSEAPETDYV HCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE IRGEGEEVAVNLIRSIANGTDKQDRAEITGIAYVDDEGKVFATPAHPVIENLDTLSPDWS EECCCHHHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCEEECCCCHHHHHHHCCCCCCC LYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKY EEECCCEEECCCCEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC NVGFFILADEEPTINKQKFVTLCQELIDRKLGVTWGINTRVTDIMRDEDLLPFFRKAGLV CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEECCCCHHHHHHCCCCHHHHHHHCCEE HVSLGTEAASQMNLNRFRKETTIEENKFAIKMLQKNGIVAEAQFVMGLEHETPETIEETY EEECCCHHHHHHHHHHHHHHCCCCCCHHEEEEHHHCCCEEEEHHHHCCCCCCHHHHHHHH QLCKDWDPDMANWTIYTPWPFSDLFKELGDRVEVRDYSKYNFVSPIIKPDNMEREDVLKG HHHHCCCCCCCCEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH VLKSYARFYARKTFFSYPWIKDPYVRKYMLGCLKAFAQTTITKRFYDIDRVKTKNRKIEI HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE DLGFDKSRILTQEEVKNLKELRPEMVADMSFGLKEAGYQREHDEHDWDAFDETTIKDRTS EECCCHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH STIRNC HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA