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The map label for this gene is ydcP [C]

Identifier: 119357950

GI number: 119357950

Start: 2506762

End: 2508024

Strand: Direct

Name: ydcP [C]

Synonym: Cpha266_2165

Alternate gene names: 119357950

Gene position: 2506762-2508024 (Clockwise)

Preceding gene: 119357946

Following gene: 119357951

Centisome position: 79.99

GC content: 50.12

Gene sequence:

>1263_bases
ATGAACCTTTCCGAGTCTGTGACAAGCGAAAAAAAAATTGAACTTATAGCGCCTGCCGGCGACTGGACCTCACTCCGCAC
CGCACTGCAAGCAGGAGCCGATGCCGTCTATTTCGGAGCTGAAGGCTATAACATGAGGGCCGGAAGCAATAACTTCACTC
CGGCTGATTTTCCCGCCATCATGACGCTCTGCAGTGAGTTCAACGCCAAAGCGTATCTGGCGCTGAACACGATCGTCTAT
GACGGCGAACTGAAAAAGATGGTTCAAACCGTCTCCGCTGCCAAAACGACAGGCTTCGATGCCGTTATCTGCTCGGACAT
GGCTGTCGTCGATGCATGCCGAAAAGCAGCAATGCCCTTTCATATGTCAACACAGGCTTCGATCAGCAACTACAGCGCAG
TAAAATTCTATGCCGACCTTGGCGCAAAAATGATCGTGCTGGCCCGCGAGCTTACCATTGACCAGGTACGCCATATTACC
TCGAAATTAAAGGCCGACCGTCTCGATGTACAGATCGAGTGCTTTGTTCACGGAGCGATGTGCGTCGCTGTTTCCGGGCG
CTGCTTCATGTCACAGGAACTTTTCGGACGCTCCGCCAACCGGGGACAGTGCGTTCAGCCCTGCCGAAGGCAATATATCA
TCACCGATCCTGAAGAGAACCAGGAGCTTGAGCTTGGTACCGATTATGTTATGAGTCCGAAAGACATGTGCGCAGTGGAA
TTTCTTGACGTTCTCATGGATGCGGGAATCAGCGCATTCAAAATCGAAGGACGAAGCCGCAGTCCGGAATATGTTCATAC
TGCGACAACAGCTTACCGACGGGCGATCGACTTCTGCACGAGCCACCGCAACAGTCCGGAATTCAGAACAGAGTACAACT
CCTTATCGAAACAGCTTAAAGAGGAACTCGCACGGGTATATAACCGGGGATTTTCGGAAGGATTTTATTTTGGAAAACCC
TTCGATGCCTGGACCAGAGAGTACGGCTCAATGGCCTCCGAAAAAAAAATCTATATCGGAGAGGTTAAAAAATATTATCC
AAAAGCGGAGGTGGCTGAAATCCTCATCTTTGCCCGAGGCCTCAAACAAGGCGATAAGCTCTCTGTTCTCGGCCCGAAGA
CAGGAGTTACAACCCTTTTTGCCGAAAGCTTTTATACCAACGATCTTCCTGCAAAAACGGCTGTCAGGGGCGACAGCGTC
ACCATCAAATGTGCAAAAGTGAGAAAGAACGACAAGGTATATGTGCTTGAAAAAAGAAGCTGA

Upstream 100 bases:

>100_bases
TTGAAGGCTCAGGGCTATTACCAATGATATCGGCGTAAAAAGAGGCTCTTCGGTATTCGGAATTTCTGATAGATTGTTAT
TGTTTAGAAGCACTGGTAAC

Downstream 100 bases:

>100_bases
TGCATAAAATGTTTTGCGTACCTTTACTAAAGAGCAGCGTTATCATGTGACCGAATCTTCAGAACGTATCGGTAAAGGAG
TCATGAGCGATGATCTATAA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MNLSESVTSEKKIELIAPAGDWTSLRTALQAGADAVYFGAEGYNMRAGSNNFTPADFPAIMTLCSEFNAKAYLALNTIVY
DGELKKMVQTVSAAKTTGFDAVICSDMAVVDACRKAAMPFHMSTQASISNYSAVKFYADLGAKMIVLARELTIDQVRHIT
SKLKADRLDVQIECFVHGAMCVAVSGRCFMSQELFGRSANRGQCVQPCRRQYIITDPEENQELELGTDYVMSPKDMCAVE
FLDVLMDAGISAFKIEGRSRSPEYVHTATTAYRRAIDFCTSHRNSPEFRTEYNSLSKQLKEELARVYNRGFSEGFYFGKP
FDAWTREYGSMASEKKIYIGEVKKYYPKAEVAEILIFARGLKQGDKLSVLGPKTGVTTLFAESFYTNDLPAKTAVRGDSV
TIKCAKVRKNDKVYVLEKRS

Sequences:

>Translated_420_residues
MNLSESVTSEKKIELIAPAGDWTSLRTALQAGADAVYFGAEGYNMRAGSNNFTPADFPAIMTLCSEFNAKAYLALNTIVY
DGELKKMVQTVSAAKTTGFDAVICSDMAVVDACRKAAMPFHMSTQASISNYSAVKFYADLGAKMIVLARELTIDQVRHIT
SKLKADRLDVQIECFVHGAMCVAVSGRCFMSQELFGRSANRGQCVQPCRRQYIITDPEENQELELGTDYVMSPKDMCAVE
FLDVLMDAGISAFKIEGRSRSPEYVHTATTAYRRAIDFCTSHRNSPEFRTEYNSLSKQLKEELARVYNRGFSEGFYFGKP
FDAWTREYGSMASEKKIYIGEVKKYYPKAEVAEILIFARGLKQGDKLSVLGPKTGVTTLFAESFYTNDLPAKTAVRGDSV
TIKCAKVRKNDKVYVLEKRS
>Mature_420_residues
MNLSESVTSEKKIELIAPAGDWTSLRTALQAGADAVYFGAEGYNMRAGSNNFTPADFPAIMTLCSEFNAKAYLALNTIVY
DGELKKMVQTVSAAKTTGFDAVICSDMAVVDACRKAAMPFHMSTQASISNYSAVKFYADLGAKMIVLARELTIDQVRHIT
SKLKADRLDVQIECFVHGAMCVAVSGRCFMSQELFGRSANRGQCVQPCRRQYIITDPEENQELELGTDYVMSPKDMCAVE
FLDVLMDAGISAFKIEGRSRSPEYVHTATTAYRRAIDFCTSHRNSPEFRTEYNSLSKQLKEELARVYNRGFSEGFYFGKP
FDAWTREYGSMASEKKIYIGEVKKYYPKAEVAEILIFARGLKQGDKLSVLGPKTGVTTLFAESFYTNDLPAKTAVRGDSV
TIKCAKVRKNDKVYVLEKRS

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=396, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1788397, Length=413, Percent_Identity=28.0871670702179, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI1789548, Length=310, Percent_Identity=29.6774193548387, Blast_Score=126, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 46736; Mature: 46736

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSESVTSEKKIELIAPAGDWTSLRTALQAGADAVYFGAEGYNMRAGSNNFTPADFPAI
CCCCHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHH
MTLCSEFNAKAYLALNTIVYDGELKKMVQTVSAAKTTGFDAVICSDMAVVDACRKAAMPF
HHHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
HMSTQASISNYSAVKFYADLGAKMIVLARELTIDQVRHITSKLKADRLDVQIECFVHGAM
CCCCCCCCCCCHHEEEHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECEE
CVAVSGRCFMSQELFGRSANRGQCVQPCRRQYIITDPEENQELELGTDYVMSPKDMCAVE
EEEECCCCEECHHHHCCCCCCCHHHHHHHCCEEEECCCCCCCEECCCCCCCCCHHHHHHH
FLDVLMDAGISAFKIEGRSRSPEYVHTATTAYRRAIDFCTSHRNSPEFRTEYNSLSKQLK
HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EELARVYNRGFSEGFYFGKPFDAWTREYGSMASEKKIYIGEVKKYYPKAEVAEILIFARG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHC
LKQGDKLSVLGPKTGVTTLFAESFYTNDLPAKTAVRGDSVTIKCAKVRKNDKVYVLEKRS
CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEECCCCCEEEEECCC
>Mature Secondary Structure
MNLSESVTSEKKIELIAPAGDWTSLRTALQAGADAVYFGAEGYNMRAGSNNFTPADFPAI
CCCCHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHH
MTLCSEFNAKAYLALNTIVYDGELKKMVQTVSAAKTTGFDAVICSDMAVVDACRKAAMPF
HHHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
HMSTQASISNYSAVKFYADLGAKMIVLARELTIDQVRHITSKLKADRLDVQIECFVHGAM
CCCCCCCCCCCHHEEEHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECEE
CVAVSGRCFMSQELFGRSANRGQCVQPCRRQYIITDPEENQELELGTDYVMSPKDMCAVE
EEEECCCCEECHHHHCCCCCCCHHHHHHHCCEEEECCCCCCCEECCCCCCCCCHHHHHHH
FLDVLMDAGISAFKIEGRSRSPEYVHTATTAYRRAIDFCTSHRNSPEFRTEYNSLSKQLK
HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EELARVYNRGFSEGFYFGKPFDAWTREYGSMASEKKIYIGEVKKYYPKAEVAEILIFARG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHC
LKQGDKLSVLGPKTGVTTLFAESFYTNDLPAKTAVRGDSVTIKCAKVRKNDKVYVLEKRS
CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEECCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]