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The map label for this gene is yddM [C]

Identifier: 119357745

GI number: 119357745

Start: 2260488

End: 2261594

Strand: Reverse

Name: yddM [C]

Synonym: Cpha266_1951

Alternate gene names: 119357745

Gene position: 2261594-2260488 (Counterclockwise)

Preceding gene: 119357746

Following gene: 119357744

Centisome position: 72.17

GC content: 49.32

Gene sequence:

>1107_bases
ATGTATAAAACAAAAGAAGATATTGCCATAGCCCGTGAAATCATCTCATGCCCCGGCGATACGCTTGCCGAGCATCTTGA
ATACACCGGCATGACCCAGGCCGAGTTGGCGGAACGGATGGGCAGGCCAAAAAAAACCATCAACGAAATCATACAGGGCA
AAGCGCAGATAACCCCCGAAACAGCCCTTCAGCTTGAGCGGGTTGTCAGCATACCTGCTGACTTTTGGATGGAGCTTGAA
CGCCGCTATCGCCTTAGGCTTGCTGAAATTGACGAAGCAGAAACGCTGCTTCAGGCAAAAGAGTGGGCCAACAGGTTTCC
CTGCAAGGCGATGAAAAACAAAGGATGGATTGCATTTGACGGAAGTTCCGCTAACGCGGGCAAAGCCCTGCTCTCCTTTT
TTAACGTTGCAAGCCCCGAAGTGTATGAAACGTTCTATCACGGGCAGGTTTATGCAACAGCCTACCGCATGAGCGAAAAA
AACAGCAAAGACCCATACGCTGTTACCGCATGGCTCCGACAGGGTGAACGGCAGGCCGAAACGCTACAGGTCCCAGATTT
TGACAGAAAAGCTTTTGAGGCAATTTTGCAGGAAATAAAAAAGCTGGTCATCAGCGGCACCGATGATTTTTTCCCGGAGC
TTCAGGAACAGTGCCGCAAAGCCGGAGTAAAGGTTGTACACACACCCTGCCTGCCAAAAGCCCCACTGCATGGTTCAACC
CGGTGGGTAAAAGGCATCCCGCTTATTCAACTCTCAAACAGGTTGAACAGGAACGATATTTTCTGGTTCACCTTCTTCCA
CGAAGCCGCTCACATCCTCAAGCACAACAAAAAGGATGTCTTTGTCGAAGGAATGGAATACTCCTGCAACGGAAAAGAAA
AAGAAGCCGAAGCCAACGACTTTGCCGAAGAGATTCTGATGAGCCGCCAGCAAGAAAAAGAGTTCATCGAGAGCGGATCC
TTTAAAAAAGACGATATCCGGCGGTTCGCAGCCAAAATCGGCACCCACCCGGCAATTGTTACAGGACGACTGGCGAATCG
ACGCGTATTGAAACAGCAGATGGGCAACGTGTACGGTTTTTTTAAAAATGTTGAACTGAAAGGTTAA

Upstream 100 bases:

>100_bases
GTACACCCTGAAAAAGGACGGGGGGCTTGACTGGATAATGATTACCCGTATTGTGATTGTAGCGATTGGTGAAGACTACC
ATTAAAACGAGAGGCACACC

Downstream 100 bases:

>100_bases
GATCGAAGCAATGAAACCAAACCAGAAACTTGAACTGACCTGGATCGGCAAAGGACAGGAGCCAAAGCTCGAACCGCGTA
TTCTCATCGAGCAGCCTGAA

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: XRE Family Plasmid Maintenance System Antidote Protein; Plasmid Maintenance System Antidote Protein; Helix-Turn-Helix Domain-Containing Protein; Addiction Module Antidote Protein HigA Family; Transcription Regulator With HTH Domain Protein; Virulence-Associated Protein I; Helix-Turn-Helix Domain Protein; Plasmid Maintenance System Antidote Protein Xre Family; Addiction Module Antidote Protein; Transcription Regulator With HTH Domain

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MYKTKEDIAIAREIISCPGDTLAEHLEYTGMTQAELAERMGRPKKTINEIIQGKAQITPETALQLERVVSIPADFWMELE
RRYRLRLAEIDEAETLLQAKEWANRFPCKAMKNKGWIAFDGSSANAGKALLSFFNVASPEVYETFYHGQVYATAYRMSEK
NSKDPYAVTAWLRQGERQAETLQVPDFDRKAFEAILQEIKKLVISGTDDFFPELQEQCRKAGVKVVHTPCLPKAPLHGST
RWVKGIPLIQLSNRLNRNDIFWFTFFHEAAHILKHNKKDVFVEGMEYSCNGKEKEAEANDFAEEILMSRQQEKEFIESGS
FKKDDIRRFAAKIGTHPAIVTGRLANRRVLKQQMGNVYGFFKNVELKG

Sequences:

>Translated_368_residues
MYKTKEDIAIAREIISCPGDTLAEHLEYTGMTQAELAERMGRPKKTINEIIQGKAQITPETALQLERVVSIPADFWMELE
RRYRLRLAEIDEAETLLQAKEWANRFPCKAMKNKGWIAFDGSSANAGKALLSFFNVASPEVYETFYHGQVYATAYRMSEK
NSKDPYAVTAWLRQGERQAETLQVPDFDRKAFEAILQEIKKLVISGTDDFFPELQEQCRKAGVKVVHTPCLPKAPLHGST
RWVKGIPLIQLSNRLNRNDIFWFTFFHEAAHILKHNKKDVFVEGMEYSCNGKEKEAEANDFAEEILMSRQQEKEFIESGS
FKKDDIRRFAAKIGTHPAIVTGRLANRRVLKQQMGNVYGFFKNVELKG
>Mature_368_residues
MYKTKEDIAIAREIISCPGDTLAEHLEYTGMTQAELAERMGRPKKTINEIIQGKAQITPETALQLERVVSIPADFWMELE
RRYRLRLAEIDEAETLLQAKEWANRFPCKAMKNKGWIAFDGSSANAGKALLSFFNVASPEVYETFYHGQVYATAYRMSEK
NSKDPYAVTAWLRQGERQAETLQVPDFDRKAFEAILQEIKKLVISGTDDFFPELQEQCRKAGVKVVHTPCLPKAPLHGST
RWVKGIPLIQLSNRLNRNDIFWFTFFHEAAHILKHNKKDVFVEGMEYSCNGKEKEAEANDFAEEILMSRQQEKEFIESGS
FKKDDIRRFAAKIGTHPAIVTGRLANRRVLKQQMGNVYGFFKNVELKG

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42167; Mature: 42167

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKTKEDIAIAREIISCPGDTLAEHLEYTGMTQAELAERMGRPKKTINEIIQGKAQITPE
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
TALQLERVVSIPADFWMELERRYRLRLAEIDEAETLLQAKEWANRFPCKAMKNKGWIAFD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEC
GSSANAGKALLSFFNVASPEVYETFYHGQVYATAYRMSEKNSKDPYAVTAWLRQGERQAE
CCCCCHHHHHHHHHHCCCCHHHHHHHCCCCEEHHHHHHCCCCCCCHHHHHHHHCCCHHHH
TLQVPDFDRKAFEAILQEIKKLVISGTDDFFPELQEQCRKAGVKVVHTPCLPKAPLHGST
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
RWVKGIPLIQLSNRLNRNDIFWFTFFHEAAHILKHNKKDVFVEGMEYSCNGKEKEAEAND
HHHCCCCHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHH
FAEEILMSRQQEKEFIESGSFKKDDIRRFAAKIGTHPAIVTGRLANRRVLKQQMGNVYGF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHH
FKNVELKG
HHCCEECC
>Mature Secondary Structure
MYKTKEDIAIAREIISCPGDTLAEHLEYTGMTQAELAERMGRPKKTINEIIQGKAQITPE
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
TALQLERVVSIPADFWMELERRYRLRLAEIDEAETLLQAKEWANRFPCKAMKNKGWIAFD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEC
GSSANAGKALLSFFNVASPEVYETFYHGQVYATAYRMSEKNSKDPYAVTAWLRQGERQAE
CCCCCHHHHHHHHHHCCCCHHHHHHHCCCCEEHHHHHHCCCCCCCHHHHHHHHCCCHHHH
TLQVPDFDRKAFEAILQEIKKLVISGTDDFFPELQEQCRKAGVKVVHTPCLPKAPLHGST
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
RWVKGIPLIQLSNRLNRNDIFWFTFFHEAAHILKHNKKDVFVEGMEYSCNGKEKEAEAND
HHHCCCCHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHH
FAEEILMSRQQEKEFIESGSFKKDDIRRFAAKIGTHPAIVTGRLANRRVLKQQMGNVYGF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHH
FKNVELKG
HHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA