| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is mpl [H]
Identifier: 119357665
GI number: 119357665
Start: 2165936
End: 2167360
Strand: Direct
Name: mpl [H]
Synonym: Cpha266_1869
Alternate gene names: 119357665
Gene position: 2165936-2167360 (Clockwise)
Preceding gene: 119357663
Following gene: 119357666
Centisome position: 69.11
GC content: 50.25
Gene sequence:
>1425_bases ATGAGCTCCATCTATTTTCTTGGAATCGGCGGTACGGCAATGGCTTCGGTTGCCGTCGCACTGTCGCATTCGGGACATGC TGTCAGCGGTTCAGACACTCAGCTCTATCCGCCGATGAGCAACTACCTTGACACTCACAACATCCGATATTTCAGCGGTT TTTCAGAAGAGAACATCCAAAAGGCATCCGCTGACCTTGTGGTTGCAGGCAATGCCATCAGCCGGGGAAACATAGAGCTT GAATATGCGCTCAACAACCGCATGGAGCTTATCTCAATGCCAGACCTGGTACGAAGGGAGCTTATCGCTCAAAACACCTC CCTTGTTGTAACCGGGACTCACGGCAAAACAACCACCACATCACTTCTTGCCTGGCTGCTTCAACATGGCGGTCTGAAAC CGGGTTTTCTTGTTGGGGGAATACCTGAAAACTTTCCGGTGGCATGCCGGGCTTCAGGACGGAGTGAAAATGGTTTTTTT GTCTCTGAAGGAGACGAATATGATACGGCGTTTTTCGACAAACGGAGCAAATTTCTTCTTTACAGGCCAGACGTTGTTAT TATCAACAATATTGAGTTTGATCATGCCGATATTTTCAACTCTCTTGACGACATCAAACGAAGTTTCCGGCTTCTGGTCA ACCTCATTCCCGGCAACGGGTTGCTGCTGGTGAACGGAGATGCTCCGGATGCGCTTGCCGTCGCGTCCCGCGCATTCTGC CGGGTAGAACGATTCGGACTGAACGGCAACAGTGAATGGAGCGCCCGCAACATATCTCTTGAAAACAGTCTCACCGGTTT TGATCTCTATTACAAGGGCAACCTTCAGGGCACCTGTCACGTTCCGCTTTTCGGATCCCATAATATCATGAACACCATTG CCGCCGTTGCGGCGGCAATCCATTCAGGCATCTCTTTCGACAGCATTGCCGCAGGACTGCCGCTCTTCAAACGACCGAAA CGTCGCATGGAAATAACCGATGACAGTGCGAACCGTATTACCCTGATCGAAGATTTCGCACACCACCCCACCGCTGTAAA AGCAACACTTGAGGCTATAGCTGACCTCTACCCGAAACGCCGAATCATCGCCTGCTTCGAACCGCGATCGAACACAACAA CACGCAATATCTTCCAGAATGAGCTGGCCGCCTGTTTCGATCCGGCTTCGATTGTCATCATGGGCATGGTTCACCGACCT GAACGATACCGCCCGGAAGAGCGTCTCGACACCGAAAGACTGAAAAATGAACTGGAAAACAAGGGGAAGACCGTTTTTCT TGCCGGAGAAAACCCCTCGATCTACCCGCAGGACATTATTGGATTCATAACAACGCGACTGCAACCGGAAGATGTGGTTG TACTCCTGAGTAACGGGAGTTTCAGCAATCTGAAACAGGGACTATTCGATAGTTTAAAAAAATAA
Upstream 100 bases:
>100_bases TACGCAGGGATACAGCGCAGCGATCGTCCCTGACAGTTGCGATCAAGCTGCTTTTTATGTATTTACTCTTGTTATTTCAT AAAAAGAACTAAGAAATCCA
Downstream 100 bases:
>100_bases TGCTCACGATTTTGATTTAGTTAGTTTATCTTCCAAAGTGTTTAAGGACATAAAACCGGTTACCATGATGCATAGTTCTG CACAGGTAACCATAACCACA
Product: UDP-N-acetylmuramate--L-alanine ligase
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MSSIYFLGIGGTAMASVAVALSHSGHAVSGSDTQLYPPMSNYLDTHNIRYFSGFSEENIQKASADLVVAGNAISRGNIEL EYALNNRMELISMPDLVRRELIAQNTSLVVTGTHGKTTTTSLLAWLLQHGGLKPGFLVGGIPENFPVACRASGRSENGFF VSEGDEYDTAFFDKRSKFLLYRPDVVIINNIEFDHADIFNSLDDIKRSFRLLVNLIPGNGLLLVNGDAPDALAVASRAFC RVERFGLNGNSEWSARNISLENSLTGFDLYYKGNLQGTCHVPLFGSHNIMNTIAAVAAAIHSGISFDSIAAGLPLFKRPK RRMEITDDSANRITLIEDFAHHPTAVKATLEAIADLYPKRRIIACFEPRSNTTTRNIFQNELAACFDPASIVIMGMVHRP ERYRPEERLDTERLKNELENKGKTVFLAGENPSIYPQDIIGFITTRLQPEDVVVLLSNGSFSNLKQGLFDSLKK
Sequences:
>Translated_474_residues MSSIYFLGIGGTAMASVAVALSHSGHAVSGSDTQLYPPMSNYLDTHNIRYFSGFSEENIQKASADLVVAGNAISRGNIEL EYALNNRMELISMPDLVRRELIAQNTSLVVTGTHGKTTTTSLLAWLLQHGGLKPGFLVGGIPENFPVACRASGRSENGFF VSEGDEYDTAFFDKRSKFLLYRPDVVIINNIEFDHADIFNSLDDIKRSFRLLVNLIPGNGLLLVNGDAPDALAVASRAFC RVERFGLNGNSEWSARNISLENSLTGFDLYYKGNLQGTCHVPLFGSHNIMNTIAAVAAAIHSGISFDSIAAGLPLFKRPK RRMEITDDSANRITLIEDFAHHPTAVKATLEAIADLYPKRRIIACFEPRSNTTTRNIFQNELAACFDPASIVIMGMVHRP ERYRPEERLDTERLKNELENKGKTVFLAGENPSIYPQDIIGFITTRLQPEDVVVLLSNGSFSNLKQGLFDSLKK >Mature_473_residues SSIYFLGIGGTAMASVAVALSHSGHAVSGSDTQLYPPMSNYLDTHNIRYFSGFSEENIQKASADLVVAGNAISRGNIELE YALNNRMELISMPDLVRRELIAQNTSLVVTGTHGKTTTTSLLAWLLQHGGLKPGFLVGGIPENFPVACRASGRSENGFFV SEGDEYDTAFFDKRSKFLLYRPDVVIINNIEFDHADIFNSLDDIKRSFRLLVNLIPGNGLLLVNGDAPDALAVASRAFCR VERFGLNGNSEWSARNISLENSLTGFDLYYKGNLQGTCHVPLFGSHNIMNTIAAVAAAIHSGISFDSIAAGLPLFKRPKR RMEITDDSANRITLIEDFAHHPTAVKATLEAIADLYPKRRIIACFEPRSNTTTRNIFQNELAACFDPASIVIMGMVHRPE RYRPEERLDTERLKNELENKGKTVFLAGENPSIYPQDIIGFITTRLQPEDVVVLLSNGSFSNLKQGLFDSLKK
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=477, Percent_Identity=35.8490566037736, Blast_Score=286, Evalue=3e-78, Organism=Escherichia coli, GI1786279, Length=432, Percent_Identity=27.3148148148148, Blast_Score=109, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 52227; Mature: 52096
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIYFLGIGGTAMASVAVALSHSGHAVSGSDTQLYPPMSNYLDTHNIRYFSGFSEENIQ CCEEEEEECCHHHHHHHHHHEECCCCEECCCCCEECCCHHHCCCCCCEEEECCCCHHHHH KASADLVVAGNAISRGNIELEYALNNRMELISMPDLVRRELIAQNTSLVVTGTHGKTTTT HCCCCEEEECCEECCCCEEEEEEECCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCHHH SLLAWLLQHGGLKPGFLVGGIPENFPVACRASGRSENGFFVSEGDEYDTAFFDKRSKFLL HHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCHHHHCCCCCEEE YRPDVVIINNIEFDHADIFNSLDDIKRSFRLLVNLIPGNGLLLVNGDAPDALAVASRAFC ECCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHH RVERFGLNGNSEWSARNISLENSLTGFDLYYKGNLQGTCHVPLFGSHNIMNTIAAVAAAI HHHEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHH HSGISFDSIAAGLPLFKRPKRRMEITDDSANRITLIEDFAHHPTAVKATLEAIADLYPKR HCCCCHHHHHHCCCHHHCCCCCEEECCCCCCEEEEEEHHCCCCHHHHHHHHHHHHHCCCC RIIACFEPRSNTTTRNIFQNELAACFDPASIVIMGMVHRPERYRPEERLDTERLKNELEN EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHC KGKTVFLAGENPSIYPQDIIGFITTRLQPEDVVVLLSNGSFSNLKQGLFDSLKK CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCC >Mature Secondary Structure SSIYFLGIGGTAMASVAVALSHSGHAVSGSDTQLYPPMSNYLDTHNIRYFSGFSEENIQ CEEEEEECCHHHHHHHHHHEECCCCEECCCCCEECCCHHHCCCCCCEEEECCCCHHHHH KASADLVVAGNAISRGNIELEYALNNRMELISMPDLVRRELIAQNTSLVVTGTHGKTTTT HCCCCEEEECCEECCCCEEEEEEECCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCHHH SLLAWLLQHGGLKPGFLVGGIPENFPVACRASGRSENGFFVSEGDEYDTAFFDKRSKFLL HHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCHHHHCCCCCEEE YRPDVVIINNIEFDHADIFNSLDDIKRSFRLLVNLIPGNGLLLVNGDAPDALAVASRAFC ECCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHH RVERFGLNGNSEWSARNISLENSLTGFDLYYKGNLQGTCHVPLFGSHNIMNTIAAVAAAI HHHEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHH HSGISFDSIAAGLPLFKRPKRRMEITDDSANRITLIEDFAHHPTAVKATLEAIADLYPKR HCCCCHHHHHHCCCHHHCCCCCEEECCCCCCEEEEEEHHCCCCHHHHHHHHHHHHHCCCC RIIACFEPRSNTTTRNIFQNELAACFDPASIVIMGMVHRPERYRPEERLDTERLKNELEN EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHC KGKTVFLAGENPSIYPQDIIGFITTRLQPEDVVVLLSNGSFSNLKQGLFDSLKK CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]