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The map label for this gene is radC [C]

Identifier: 119357558

GI number: 119357558

Start: 2003552

End: 2004223

Strand: Direct

Name: radC [C]

Synonym: Cpha266_1761

Alternate gene names: 119357558

Gene position: 2003552-2004223 (Clockwise)

Preceding gene: 119357557

Following gene: 119357560

Centisome position: 63.93

GC content: 50.3

Gene sequence:

>672_bases
ATGCGCATCCACGACCTCGATCCTGAAAACAGGCCGCGAGAACGGTTTTTGAGAACCGGACCGGCATCGCTCAGTCCATC
AGAACTTCTGGCACTCGTTCTGCGTTCAGGAACCAGAAACAACAACATTATTGATACATGCAACGCTCTTATTGCCAGGT
TCGGACTTGAAAGGCTTGCTGACATACCGCTCAGCGAACTGCAGGAGATAAAGGGTATCGGACAGGCGAAGGCGATGCAG
ATCATCGCTGTGTTTGAACTGAACAAGCGGATTCACTACAGTCGGAACCTCCAGAGAAAAGTGCTCTCGGCTCGGGATGT
GTTTGAATACATGGCAGGAAGAGTTCCCGATATAACCAAGGAACACCTTTTCGTTCTCCATCTGAACACGAAAAACCAGA
TTATCCGCAACGAACAGGTTACGGTAGGAACCCTGAACGCCTCTCTTGCCCATCCAAGAGAGGTATTCAAATCAGCCATC
AGGGAGTCTGCCCATGCCATTATTCTCGTGCACAACCACCCTTCGGGAGATGTTGAACCAAGCAATGCCGACCGGCAGGT
AACAGAAATCCTCCGGCAGGCGGGATCCTTTCTCCAGATTGATCTTCTTGATCACGTTATCATCGGTGTTGATACCTGGT
TCAGCTTTCGCGAACACTCCCTGCTAACGTAA

Upstream 100 bases:

>100_bases
TTCAGTCCGTTGATAAAGAAAATCTGAGCGAGAAATTTATTATTTTCACCTGAAGCGTTTCTTTGTTCTTAGTCAGCACC
AATGCTCATTTTTTTTCATT

Downstream 100 bases:

>100_bases
ACCCCTGTATCGGCAAAACCGGGCAAAAGAACACCTGCGGCACCATGACAGCGAATTGCCGCCTGTACCGGTTCCCTTTT
TTGAAAATGTTGCTTCTGCC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRIHDLDPENRPRERFLRTGPASLSPSELLALVLRSGTRNNNIIDTCNALIARFGLERLADIPLSELQEIKGIGQAKAMQ
IIAVFELNKRIHYSRNLQRKVLSARDVFEYMAGRVPDITKEHLFVLHLNTKNQIIRNEQVTVGTLNASLAHPREVFKSAI
RESAHAIILVHNHPSGDVEPSNADRQVTEILRQAGSFLQIDLLDHVIIGVDTWFSFREHSLLT

Sequences:

>Translated_223_residues
MRIHDLDPENRPRERFLRTGPASLSPSELLALVLRSGTRNNNIIDTCNALIARFGLERLADIPLSELQEIKGIGQAKAMQ
IIAVFELNKRIHYSRNLQRKVLSARDVFEYMAGRVPDITKEHLFVLHLNTKNQIIRNEQVTVGTLNASLAHPREVFKSAI
RESAHAIILVHNHPSGDVEPSNADRQVTEILRQAGSFLQIDLLDHVIIGVDTWFSFREHSLLT
>Mature_223_residues
MRIHDLDPENRPRERFLRTGPASLSPSELLALVLRSGTRNNNIIDTCNALIARFGLERLADIPLSELQEIKGIGQAKAMQ
IIAVFELNKRIHYSRNLQRKVLSARDVFEYMAGRVPDITKEHLFVLHLNTKNQIIRNEQVTVGTLNASLAHPREVFKSAI
RESAHAIILVHNHPSGDVEPSNADRQVTEILRQAGSFLQIDLLDHVIIGVDTWFSFREHSLLT

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=209, Percent_Identity=34.9282296650718, Blast_Score=133, Evalue=8e-33,
Organism=Escherichia coli, GI1788312, Length=120, Percent_Identity=45, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788997, Length=120, Percent_Identity=40.8333333333333, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367100, Length=120, Percent_Identity=40.8333333333333, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1761_CHLPD (A1BHA1)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_912202.1
- ProteinModelPortal:   A1BHA1
- SMR:   A1BHA1
- STRING:   A1BHA1
- GeneID:   4570105
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_1761
- NMPDR:   fig|290317.7.peg.1844
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25260; Mature: 25260

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIHDLDPENRPRERFLRTGPASLSPSELLALVLRSGTRNNNIIDTCNALIARFGLERLA
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
DIPLSELQEIKGIGQAKAMQIIAVFELNKRIHYSRNLQRKVLSARDVFEYMAGRVPDITK
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EHLFVLHLNTKNQIIRNEQVTVGTLNASLAHPREVFKSAIRESAHAIILVHNHPSGDVEP
CCEEEEEECCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCC
SNADRQVTEILRQAGSFLQIDLLDHVIIGVDTWFSFREHSLLT
CCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIHDLDPENRPRERFLRTGPASLSPSELLALVLRSGTRNNNIIDTCNALIARFGLERLA
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
DIPLSELQEIKGIGQAKAMQIIAVFELNKRIHYSRNLQRKVLSARDVFEYMAGRVPDITK
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EHLFVLHLNTKNQIIRNEQVTVGTLNASLAHPREVFKSAIRESAHAIILVHNHPSGDVEP
CCEEEEEECCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCC
SNADRQVTEILRQAGSFLQIDLLDHVIIGVDTWFSFREHSLLT
CCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA