| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is comEC [H]
Identifier: 119357519
GI number: 119357519
Start: 1948838
End: 1951039
Strand: Reverse
Name: comEC [H]
Synonym: Cpha266_1722
Alternate gene names: 119357519
Gene position: 1951039-1948838 (Counterclockwise)
Preceding gene: 119357521
Following gene: 119357518
Centisome position: 62.26
GC content: 52.27
Gene sequence:
>2202_bases ATGTCGGCAATTTTCGCTCCATATCCTGCACTCAGGCTTCTGTTACAGGTTATAGCAGGTATTCTTTGCGGAACGCTGCT TCTTGTGCCGCTTGAGGCGTGGCTTGCTTGCTCACTTTTCTTTTTTATTCTGCTTTCCTGCGCTCTTTTTTACGAGTTTA TTGGACGTAAAGGTTCGTTTCCACTATCGTTGACGGCGATCGGGTATTTTTTTTTCGTGGTTGTTGCTTTTGCGGCCTAT AGCGACTATCTGGTACACTATCAGTCCAAAGCCGGACTTTTACGTTACAGCGGAAAAGAGGTGATTCTCTACGGGCGGGT TGCCGACAGGCCGGAACGTACCGAAAAGGGAGTCAAGTGGACGATGGAGGCAGAAGAGCTGTTTTTTGAAGGCCGGACAA TCACACTTCATGAGCGGCTCAAGGTGTTTATGAGGGCACCGGCGGGCGAAAAGATCCGAATGGCTTATGGCGACAGGATT CGCGTGAAGGGACAGATTGCCGCGATTCCCGGTGCTGCAAACCGTGGAGAATTCGATCCCCGATACTATGCGATGCTTCA GCAGGTCAGGGTGCAGCTATACTGTCACGGTCCATGGATGGTGTTGCATGATGGCCGGAACACTCTGAGTGTGTTTGAAC GCTTTGTGGTGCAGCCGGTTTATGCCTATGTTGTCCGGAGCGTTGAAACGCTGATTCCGCCGGGCGAAGAGCGCAAGCTT GTCAGGGGCGTGCTGCTCGGAGAAAAGGAGGTGCTGACCGAAGAGGTTTTCGACGCCTTCAAACGAACCGGCACAGCGCA TGTGCTTGCTGTTTCGGGCTTCAACGTCGCGCTTCTCGCACTCGGCATTCACGTCTGTCTGCAGCGCGTCAAGGTGACAG CTCAGGGCCGATGGATCTCTTTTCTTCTGATTGCCTTTATTCTGCTCGTTTTCAGCTATGTCACCGGCAATTCCGCATCG GTAAAACGTGCGGCCATCATGTCGGTCGTGCTCCTCGGTGGCGAGACGCTCGGGAGAAAAGCCTTTGCGGTCAACTCACT TGCCGCATCCGATGTGATTATTCTGTTTATTGACCCGCTTGACCTGTTCAATCCCGGTTTTCTGATGACCAACGCCGCGG TTCTTGCCATTCTGCTGGTCTATCCGCTTTTTTACGGATCGGATAAGGAGGAAGAGGGCGTATGGCGCAGGATATGGAGA TTTCTGCTCAGCAGTTTTTTTGTCAGTCTTGCCGCCATCATCGGGGTTTCTCCCGTTATAGCCTATTACTTCGGTACCTT TTCACTTGTCAGTCTTGTCGCCAATCTGCCGGTCGTTCTCTTTTCAACGCTCCTGATGTATGCCCTGATGCCGATGCTGC TTGTAAACCTCGTTTCAGGGTATCTCGCCTCATATTTTGCCATGAGCGGCTATCTTTTTGCCTGGTTGACTCTCCAGTCT GCTCTTTTTTTCAGCAAGCTCCCGTTTGCCTCGATAGAACTTAAACCCGATATGATCGAAGTGGCGATCTACTATACTGT ACTGACGGTTGCAGCATGGTATCTGTACAAAAAAACATGGGGCAGGCTTGCCATTACCCTGCTTCTTGGTCTCAATCTGT TTTTCTGGTACTCTTTTCTCTCCGCCGGGGAACAGGGCAGGGGAGTGGTGACGGTGAATCTTGGAAAAAATCTTGCCGTT CTCTTTTCGACGCATGGCGAGACGGTGGTGATCGATACCGGAACCCGATCACGCGACGTTGAACGAGTGATGCGCCAGGT CAGTGAGTACAGGTTGGCCGAGCCTGTGGCAGCGGTACAGTTTTTTTCGCCGGATTCACTTGTCGGGATGGTGCCGGTAA AGCGCCATCTTCGGCAGCAGGAGAACTCCCTTGCGCTTGCCTCCATGGTGATCGTGCGTCCGGAGGAGAAGGTGCTGAAA CTCTGGAGCAGAGAGCGCTCGCTGCTTCTGATCTCCGGCACCAGCCGATTGAAAGAGGAGGAACTCTACAAAGCCGATGT GGTGCTGCTCTGGGTTTACCGGTTTGCCGAAAAACAGCGGCGGGAAATTTCTTCATGGCTGAACTATGCTCGTCCAATAA AGTGCATCATCGTTCCAGGCTCGTTTCTCACCCTTCGACAGAAAGAGGATCTCATCCGTTTTGCCGCAGCTCATCCCGAA CTCGAAATCCGTTCCAAAGCCCGACAGATCGTGATTCGCTGA
Upstream 100 bases:
>100_bases TTTTTTTGCGTTACTTTTTTTAAGATAAGAATATATGAAAACAATGATTTCGTTACGGTAAAGAAATTTATCTGCGCTCT ACCATAACCACACTGCGTTC
Downstream 100 bases:
>100_bases GGTTTTCTTTGTCTCTGACGATGCTGCCCCGGGTTTTCTGTTCCGTTTTTTTGACAGGGCATTTTCGTTGTTTAAATTAC GTCGAAAATATTTGTTGCGA
Product: ComEC/Rec2-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 733; Mature: 732
Protein sequence:
>733_residues MSAIFAPYPALRLLLQVIAGILCGTLLLVPLEAWLACSLFFFILLSCALFYEFIGRKGSFPLSLTAIGYFFFVVVAFAAY SDYLVHYQSKAGLLRYSGKEVILYGRVADRPERTEKGVKWTMEAEELFFEGRTITLHERLKVFMRAPAGEKIRMAYGDRI RVKGQIAAIPGAANRGEFDPRYYAMLQQVRVQLYCHGPWMVLHDGRNTLSVFERFVVQPVYAYVVRSVETLIPPGEERKL VRGVLLGEKEVLTEEVFDAFKRTGTAHVLAVSGFNVALLALGIHVCLQRVKVTAQGRWISFLLIAFILLVFSYVTGNSAS VKRAAIMSVVLLGGETLGRKAFAVNSLAASDVIILFIDPLDLFNPGFLMTNAAVLAILLVYPLFYGSDKEEEGVWRRIWR FLLSSFFVSLAAIIGVSPVIAYYFGTFSLVSLVANLPVVLFSTLLMYALMPMLLVNLVSGYLASYFAMSGYLFAWLTLQS ALFFSKLPFASIELKPDMIEVAIYYTVLTVAAWYLYKKTWGRLAITLLLGLNLFFWYSFLSAGEQGRGVVTVNLGKNLAV LFSTHGETVVIDTGTRSRDVERVMRQVSEYRLAEPVAAVQFFSPDSLVGMVPVKRHLRQQENSLALASMVIVRPEEKVLK LWSRERSLLLISGTSRLKEEELYKADVVLLWVYRFAEKQRREISSWLNYARPIKCIIVPGSFLTLRQKEDLIRFAAAHPE LEIRSKARQIVIR
Sequences:
>Translated_733_residues MSAIFAPYPALRLLLQVIAGILCGTLLLVPLEAWLACSLFFFILLSCALFYEFIGRKGSFPLSLTAIGYFFFVVVAFAAY SDYLVHYQSKAGLLRYSGKEVILYGRVADRPERTEKGVKWTMEAEELFFEGRTITLHERLKVFMRAPAGEKIRMAYGDRI RVKGQIAAIPGAANRGEFDPRYYAMLQQVRVQLYCHGPWMVLHDGRNTLSVFERFVVQPVYAYVVRSVETLIPPGEERKL VRGVLLGEKEVLTEEVFDAFKRTGTAHVLAVSGFNVALLALGIHVCLQRVKVTAQGRWISFLLIAFILLVFSYVTGNSAS VKRAAIMSVVLLGGETLGRKAFAVNSLAASDVIILFIDPLDLFNPGFLMTNAAVLAILLVYPLFYGSDKEEEGVWRRIWR FLLSSFFVSLAAIIGVSPVIAYYFGTFSLVSLVANLPVVLFSTLLMYALMPMLLVNLVSGYLASYFAMSGYLFAWLTLQS ALFFSKLPFASIELKPDMIEVAIYYTVLTVAAWYLYKKTWGRLAITLLLGLNLFFWYSFLSAGEQGRGVVTVNLGKNLAV LFSTHGETVVIDTGTRSRDVERVMRQVSEYRLAEPVAAVQFFSPDSLVGMVPVKRHLRQQENSLALASMVIVRPEEKVLK LWSRERSLLLISGTSRLKEEELYKADVVLLWVYRFAEKQRREISSWLNYARPIKCIIVPGSFLTLRQKEDLIRFAAAHPE LEIRSKARQIVIR >Mature_732_residues SAIFAPYPALRLLLQVIAGILCGTLLLVPLEAWLACSLFFFILLSCALFYEFIGRKGSFPLSLTAIGYFFFVVVAFAAYS DYLVHYQSKAGLLRYSGKEVILYGRVADRPERTEKGVKWTMEAEELFFEGRTITLHERLKVFMRAPAGEKIRMAYGDRIR VKGQIAAIPGAANRGEFDPRYYAMLQQVRVQLYCHGPWMVLHDGRNTLSVFERFVVQPVYAYVVRSVETLIPPGEERKLV RGVLLGEKEVLTEEVFDAFKRTGTAHVLAVSGFNVALLALGIHVCLQRVKVTAQGRWISFLLIAFILLVFSYVTGNSASV KRAAIMSVVLLGGETLGRKAFAVNSLAASDVIILFIDPLDLFNPGFLMTNAAVLAILLVYPLFYGSDKEEEGVWRRIWRF LLSSFFVSLAAIIGVSPVIAYYFGTFSLVSLVANLPVVLFSTLLMYALMPMLLVNLVSGYLASYFAMSGYLFAWLTLQSA LFFSKLPFASIELKPDMIEVAIYYTVLTVAAWYLYKKTWGRLAITLLLGLNLFFWYSFLSAGEQGRGVVTVNLGKNLAVL FSTHGETVVIDTGTRSRDVERVMRQVSEYRLAEPVAAVQFFSPDSLVGMVPVKRHLRQQENSLALASMVIVRPEEKVLKL WSRERSLLLISGTSRLKEEELYKADVVLLWVYRFAEKQRREISSWLNYARPIKCIIVPGSFLTLRQKEDLIRFAAAHPEL EIRSKARQIVIR
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=437, Percent_Identity=24.7139588100687, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 82624; Mature: 82492
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAIFAPYPALRLLLQVIAGILCGTLLLVPLEAWLACSLFFFILLSCALFYEFIGRKGSF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PLSLTAIGYFFFVVVAFAAYSDYLVHYQSKAGLLRYSGKEVILYGRVADRPERTEKGVKW CCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCEEEEEECCCCCCCHHCCCCEE TMEAEELFFEGRTITLHERLKVFMRAPAGEKIRMAYGDRIRVKGQIAAIPGAANRGEFDP EEEHHHHHHCCCEEEHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCCCCCCCH RYYAMLQQVRVQLYCHGPWMVLHDGRNTLSVFERFVVQPVYAYVVRSVETLIPPGEERKL HHHHHHHHHHEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VRGVLLGEKEVLTEEVFDAFKRTGTAHVLAVSGFNVALLALGIHVCLQRVKVTAQGRWIS HHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHH FLLIAFILLVFSYVTGNSASVKRAAIMSVVLLGGETLGRKAFAVNSLAASDVIILFIDPL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHCCHHHHHHHHCCCCEEEEEECCH DLFNPGFLMTNAAVLAILLVYPLFYGSDKEEEGVWRRIWRFLLSSFFVSLAAIIGVSPVI HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AYYFGTFSLVSLVANLPVVLFSTLLMYALMPMLLVNLVSGYLASYFAMSGYLFAWLTLQS HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALFFSKLPFASIELKPDMIEVAIYYTVLTVAAWYLYKKTWGRLAITLLLGLNLFFWYSFL HHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAGEQGRGVVTVNLGKNLAVLFSTHGETVVIDTGTRSRDVERVMRQVSEYRLAEPVAAVQ HCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHE FFSPDSLVGMVPVKRHLRQQENSLALASMVIVRPEEKVLKLWSRERSLLLISGTSRLKEE ECCCCCCEEHHHHHHHHHHHHCCHHHHHHEEECCHHHHHHHHCCCCCEEEEECCCHHHHH ELYKADVVLLWVYRFAEKQRREISSWLNYARPIKCIIVPGSFLTLRQKEDLIRFAAAHPE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCCC LEIRSKARQIVIR HHHHHHHHHHCCC >Mature Secondary Structure SAIFAPYPALRLLLQVIAGILCGTLLLVPLEAWLACSLFFFILLSCALFYEFIGRKGSF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PLSLTAIGYFFFVVVAFAAYSDYLVHYQSKAGLLRYSGKEVILYGRVADRPERTEKGVKW CCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCEEEEEECCCCCCCHHCCCCEE TMEAEELFFEGRTITLHERLKVFMRAPAGEKIRMAYGDRIRVKGQIAAIPGAANRGEFDP EEEHHHHHHCCCEEEHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCCCCCCCH RYYAMLQQVRVQLYCHGPWMVLHDGRNTLSVFERFVVQPVYAYVVRSVETLIPPGEERKL HHHHHHHHHHEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VRGVLLGEKEVLTEEVFDAFKRTGTAHVLAVSGFNVALLALGIHVCLQRVKVTAQGRWIS HHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHH FLLIAFILLVFSYVTGNSASVKRAAIMSVVLLGGETLGRKAFAVNSLAASDVIILFIDPL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHCCHHHHHHHHCCCCEEEEEECCH DLFNPGFLMTNAAVLAILLVYPLFYGSDKEEEGVWRRIWRFLLSSFFVSLAAIIGVSPVI HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AYYFGTFSLVSLVANLPVVLFSTLLMYALMPMLLVNLVSGYLASYFAMSGYLFAWLTLQS HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALFFSKLPFASIELKPDMIEVAIYYTVLTVAAWYLYKKTWGRLAITLLLGLNLFFWYSFL HHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAGEQGRGVVTVNLGKNLAVLFSTHGETVVIDTGTRSRDVERVMRQVSEYRLAEPVAAVQ HCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHE FFSPDSLVGMVPVKRHLRQQENSLALASMVIVRPEEKVLKLWSRERSLLLISGTSRLKEE ECCCCCCEEHHHHHHHHHHHHCCHHHHHHEEECCHHHHHHHHCCCCCEEEEECCCHHHHH ELYKADVVLLWVYRFAEKQRREISSWLNYARPIKCIIVPGSFLTLRQKEDLIRFAAAHPE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCCC LEIRSKARQIVIR HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]