| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is hsdM [C]
Identifier: 119357510
GI number: 119357510
Start: 1940022
End: 1942010
Strand: Reverse
Name: hsdM [C]
Synonym: Cpha266_1712
Alternate gene names: 119357510
Gene position: 1942010-1940022 (Counterclockwise)
Preceding gene: 119357511
Following gene: 119357509
Centisome position: 61.97
GC content: 58.57
Gene sequence:
>1989_bases ATGCACTGGATCGCACCTTCCGAAAAAGATACCGCTACCGCCGCACTCGAAAAGCGCCTGTGGGATGCCGCCGACCAGCT TCGGGCGAACTCCGGCCTCAAGGCCCAGGAGTATTCCGCACCCGTTCTCGGGCTTATTTTCCTGCTTTTTGCCGACGTGC GGTTCGCCGCCCGGAGGGCTGAGCTTGAATCGGCAAAGAGCAGTACTCGCCGGGGGAGCCGGGTGGACGATCCGGCGGCC TATCATGCCGAAGGCGTGCTCTACCTTTCGCCAGAAGCGCGGTTTGTCTACCTGCTCAACCGTCCTGAAGCCGAGAACAT CGGCGTGATGGTCAACGAAGCCATGCGCGCTATCGAGAAGCACAATCCGCAGCTTGCCGGTGTGCTGCCGAAGACCTACT ACCTGTTCGACAGCCCGCTTCTGAAGCAGTTGCTGAAAAAGGTGTCGGAGATTCCCTCTTCGATGGATTACGATGCGTTC GGACGCATCTACGAGTACTTTCTCGGCGAATTCGCCATGAGCGAAGGGCAGGGCGGGGGAGAGTTCTATACGCCCGTCAG CATCGTTCGTCTCCTGACCGAAGTGATCGAGCCATATCACGGGCGCATTCTCGACCCCGCATGCGGTTCCGGCGGCATGT TCGTCTCCTCGGCCCGGTTCGTTGCCCAGCACAAGCAGAACCCTTCGGCAGAACTCTCCATTCACGGCATCGAGAAGACC GACGAGACGGGAAGGCTTTGTCGCCTGAACCTTGCGGTGCACGGGCTTGAAGGCCGTATCATGCATGGCGGCAACGTGAA CAGCTACTACGACGATCCGCATGATGCAACGGGGAATTTTGATTTCGTGCTGGCCAATCCGCCGTTCAATGTTAACGCCG TTGACAAGGAACGCCTGAAAGATTCGGTCGGTCCGGGACGACGCTTTCCTTTCGGTCTTCCGCGAACCGACAACGCGAAC TATCTCTGGATACAGCTTTTCTACTCGGCACTGAACGAAAGGGGGAGAGCCGGTTTCGTCATGGCGAACTCGGCTTCCGA CGCCCGCTCCTCGGAGCAGGAAATCCGTCGCCAGCTTATCGAAAGCCGTACGGTGGACGTAATGGTCGCAGTCGGGCCGA ACATGTTCTACACCGTCACGCTGCCCTGCACGCTGTGGTTTTTCGACAAGGCGAAAGCAAGGCTTTCGCCACCCTCATCC CCGGCCCTTCTCCCAAAGGTAGAAGGGGGAGAAGAAGATTTACCATTATCCAGACGCATTCTCACAGAGCGCGACGGGGA AGGGAATGTACCGAACAGGGCGGATACGGTGCTGTTTATCGATGCACGGCACATCTACCGGCAGGTTGACAGGGCTCATC GCGACTGGACGCCCGCCCAGATCGGCTTTATGGCCAACCTTGTCCGTCTCTGGCGCGGCGAAGCGCTCGACTACACGCTG GGTGGCGACGAAGCTCGCGAAAAGATCGAAGAGGTTTTCGCTGCCAAAAGTTCTGACCCGGCAGGCTTGAACGGGCAGGA GGGGCATTCTGCCCACGCACTGGCCGCCGAATCCCCCGCTCCATACGGATCAAGTGATGAAATTGAAAAACTCCCTTCTA CCTTTGGGAGAAGGGCCGGGGATGAGGGTGCTGTCAAGCATGAGGGTGCCGGGAACGTCGCCTATCGCGATGAAGCAAAA GAACACCCTTCGCCCTCTGGGAGAAGGGCCGGGGATGAGGGTGCTGTCAAGCATGAGGGTGCCGGGAACGTCGCCTATAG CGACATTCCCGGCTTATGCAAGGCCGCCACATTAAAGGAAATAGAGGCGCAGGGCTGGTCGCTCAATCCCGGCAGATATG TCGGCGTTGCTCCCGGCGAGGCAATCAGCGACGAGGATTTCAAGGTCCAGCTCGAAACGCTGAACGAAGAACTGGAACTT CTGAATGCGCAGGCGCGTGAACTGGAGGCAACGATTGCCGGAAATGTGGCGCAAATTTTGGAGACCTGA
Upstream 100 bases:
>100_bases GCCGCAGGATAATCGGACAGGTTTCATTGGAATACAATGCCTGTTAGCTGTATATTACTCTTTATTTTATCCATTTAGCG CCGATAGTCAAGCAGTAACC
Downstream 100 bases:
>100_bases CCATGAGTGAATTGTGTGAGGCAACGTGTAAGGAATTCTTACAAGTTCAGTTTGAAGGTACCAGGCAACTGTTCAGAAAT ACTTAACAGTTCGAGAAAAG
Product: N-6 DNA methylase
Products: NA
Alternate protein names: M.MjaXP [H]
Number of amino acids: Translated: 662; Mature: 662
Protein sequence:
>662_residues MHWIAPSEKDTATAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRGSRVDDPAA YHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQLAGVLPKTYYLFDSPLLKQLLKKVSEIPSSMDYDAF GRIYEYFLGEFAMSEGQGGGEFYTPVSIVRLLTEVIEPYHGRILDPACGSGGMFVSSARFVAQHKQNPSAELSIHGIEKT DETGRLCRLNLAVHGLEGRIMHGGNVNSYYDDPHDATGNFDFVLANPPFNVNAVDKERLKDSVGPGRRFPFGLPRTDNAN YLWIQLFYSALNERGRAGFVMANSASDARSSEQEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKARLSPPSS PALLPKVEGGEEDLPLSRRILTERDGEGNVPNRADTVLFIDARHIYRQVDRAHRDWTPAQIGFMANLVRLWRGEALDYTL GGDEAREKIEEVFAAKSSDPAGLNGQEGHSAHALAAESPAPYGSSDEIEKLPSTFGRRAGDEGAVKHEGAGNVAYRDEAK EHPSPSGRRAGDEGAVKHEGAGNVAYSDIPGLCKAATLKEIEAQGWSLNPGRYVGVAPGEAISDEDFKVQLETLNEELEL LNAQARELEATIAGNVAQILET
Sequences:
>Translated_662_residues MHWIAPSEKDTATAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRGSRVDDPAA YHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQLAGVLPKTYYLFDSPLLKQLLKKVSEIPSSMDYDAF GRIYEYFLGEFAMSEGQGGGEFYTPVSIVRLLTEVIEPYHGRILDPACGSGGMFVSSARFVAQHKQNPSAELSIHGIEKT DETGRLCRLNLAVHGLEGRIMHGGNVNSYYDDPHDATGNFDFVLANPPFNVNAVDKERLKDSVGPGRRFPFGLPRTDNAN YLWIQLFYSALNERGRAGFVMANSASDARSSEQEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKARLSPPSS PALLPKVEGGEEDLPLSRRILTERDGEGNVPNRADTVLFIDARHIYRQVDRAHRDWTPAQIGFMANLVRLWRGEALDYTL GGDEAREKIEEVFAAKSSDPAGLNGQEGHSAHALAAESPAPYGSSDEIEKLPSTFGRRAGDEGAVKHEGAGNVAYRDEAK EHPSPSGRRAGDEGAVKHEGAGNVAYSDIPGLCKAATLKEIEAQGWSLNPGRYVGVAPGEAISDEDFKVQLETLNEELEL LNAQARELEATIAGNVAQILET >Mature_662_residues MHWIAPSEKDTATAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRGSRVDDPAA YHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQLAGVLPKTYYLFDSPLLKQLLKKVSEIPSSMDYDAF GRIYEYFLGEFAMSEGQGGGEFYTPVSIVRLLTEVIEPYHGRILDPACGSGGMFVSSARFVAQHKQNPSAELSIHGIEKT DETGRLCRLNLAVHGLEGRIMHGGNVNSYYDDPHDATGNFDFVLANPPFNVNAVDKERLKDSVGPGRRFPFGLPRTDNAN YLWIQLFYSALNERGRAGFVMANSASDARSSEQEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKARLSPPSS PALLPKVEGGEEDLPLSRRILTERDGEGNVPNRADTVLFIDARHIYRQVDRAHRDWTPAQIGFMANLVRLWRGEALDYTL GGDEAREKIEEVFAAKSSDPAGLNGQEGHSAHALAAESPAPYGSSDEIEKLPSTFGRRAGDEGAVKHEGAGNVAYRDEAK EHPSPSGRRAGDEGAVKHEGAGNVAYSDIPGLCKAATLKEIEAQGWSLNPGRYVGVAPGEAISDEDFKVQLETLNEELEL LNAQARELEATIAGNVAQILET
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=272, Percent_Identity=23.8970588235294, Blast_Score=78, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 72694; Mature: 72694
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHWIAPSEKDTATAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH ELESAKSSTRRGSRVDDPAAYHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEK HHHHHHHHHCCCCCCCCCCHHCCCCEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHH HNPQLAGVLPKTYYLFDSPLLKQLLKKVSEIPSSMDYDAFGRIYEYFLGEFAMSEGQGGG CCCCEEECCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC EFYTPVSIVRLLTEVIEPYHGRILDPACGSGGMFVSSARFVAQHKQNPSAELSIHGIEKT CEECHHHHHHHHHHHHCCCCCEEECCCCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCC DETGRLCRLNLAVHGLEGRIMHGGNVNSYYDDPHDATGNFDFVLANPPFNVNAVDKERLK CCCCCEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHH DSVGPGRRFPFGLPRTDNANYLWIQLFYSALNERGRAGFVMANSASDARSSEQEIRRQLI HHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH ESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKARLSPPSSPALLPKVEGGEEDLPLSRRI HCCCEEEEEEECCCEEEEEEECEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHH LTERDGEGNVPNRADTVLFIDARHIYRQVDRAHRDWTPAQIGFMANLVRLWRGEALDYTL HHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEC GGDEAREKIEEVFAAKSSDPAGLNGQEGHSAHALAAESPAPYGSSDEIEKLPSTFGRRAG CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCC DEGAVKHEGAGNVAYRDEAKEHPSPSGRRAGDEGAVKHEGAGNVAYSDIPGLCKAATLKE CCCCEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHH IEAQGWSLNPGRYVGVAPGEAISDEDFKVQLETLNEELELLNAQARELEATIAGNVAQIL HHCCCCCCCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ET CC >Mature Secondary Structure MHWIAPSEKDTATAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH ELESAKSSTRRGSRVDDPAAYHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEK HHHHHHHHHCCCCCCCCCCHHCCCCEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHH HNPQLAGVLPKTYYLFDSPLLKQLLKKVSEIPSSMDYDAFGRIYEYFLGEFAMSEGQGGG CCCCEEECCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC EFYTPVSIVRLLTEVIEPYHGRILDPACGSGGMFVSSARFVAQHKQNPSAELSIHGIEKT CEECHHHHHHHHHHHHCCCCCEEECCCCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCC DETGRLCRLNLAVHGLEGRIMHGGNVNSYYDDPHDATGNFDFVLANPPFNVNAVDKERLK CCCCCEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHH DSVGPGRRFPFGLPRTDNANYLWIQLFYSALNERGRAGFVMANSASDARSSEQEIRRQLI HHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH ESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKARLSPPSSPALLPKVEGGEEDLPLSRRI HCCCEEEEEEECCCEEEEEEECEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHH LTERDGEGNVPNRADTVLFIDARHIYRQVDRAHRDWTPAQIGFMANLVRLWRGEALDYTL HHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEC GGDEAREKIEEVFAAKSSDPAGLNGQEGHSAHALAAESPAPYGSSDEIEKLPSTFGRRAG CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCC DEGAVKHEGAGNVAYRDEAKEHPSPSGRRAGDEGAVKHEGAGNVAYSDIPGLCKAATLKE CCCCEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHH IEAQGWSLNPGRYVGVAPGEAISDEDFKVQLETLNEELELLNAQARELEATIAGNVAQIL HHCCCCCCCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ET CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]