| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357408
Identifier: 119357408
GI number: 119357408
Start: 1827876
End: 1830356
Strand: Reverse
Name: 119357408
Synonym: Cpha266_1607
Alternate gene names: NA
Gene position: 1830356-1827876 (Counterclockwise)
Preceding gene: 119357409
Following gene: 119357402
Centisome position: 58.41
GC content: 55.26
Gene sequence:
>2481_bases ATGGCTGAAACTGCATGGCTTGTTGCTGGATCGGTTACTCAGGTTGCTGATGGTAATGTTGCCTGGAGCAGTATGGGTAA TGTTGCTGTGAGTGATGATCTGTATGCTACGGTTACCTTATCGAAAAATACTTACAGCCATACGTTGCGGCTGACAGGGT TCAGCCCTGGCATTCCGGGAAGTGCGACGAATATTCGCATGGAGCTTGCTGTTGAGCGAAAGGCTTCTGCCAGTGGTTTG GTTGATAATCTGGTTCAGTGGTTTAATGGTTCGGAACGGAGTGGCGATAACAAGGCTTCTTCTGCTAACTGGCCGACCGG CGATGGTGTTGCTTCGTATGGTTCTTCGTCGGATAGCTGGAACAGTGGCATTACTGCGGCTCTGGCAAACAGTGCTGCCA GTGGTTTTGATGTTTCTGTTTATAATGGCGGGTTGCTTACCAATAAAACGGCTTCTGTCGATCAGGTCAGGGTAAAGTTT TATTATGATCCTCCTCCTGTTCAAGAGTTAAGCGTTCCTGTTGAGGTGAGTGGATCTCTGGCTGTTTCGCCTGTTCTGGT GCTGAATACGAGCGTTTTGGTTGCGTGCGGTGATGGGTGTGCCTGTGAGGTGGTGAAGGTTGTGAATAGCGGGGCCGGGT TTGCGTTGAGTGTTTCGTTGGGCGTTGTACCGGTTAGGGTTGGGAGTGCGGCTGTGCTGGTGAGTGTGCTTTGTTCGGTC AGTGCCGGGGTGGTGGTGGTGCGTAATGGTGCGGGGGCGGTTATTGGTTCTGTTGCGGTTGTTGCTGCGGCTGAACAGGT TATTGCTGATCAGTCAAGCGTATCGGCTGCGGTTGCGTGCCTGGCTTCTTTTTCTGTTCAGGCCGGGCAGGTTTATGCTG CGGTTGTGCCGTGCAGCGCAGTGAGTTCTTGCAGTGCAGCTCCGGTGAAGGTTATGGGTGTTGGTGCGGGTTTTGTTGCG AGTGGTGGCGTGCTGGTGAGTGGTGTGGAAATTGCTGATGTTCTGGTTCCTGTTGGCTTGCATGTTGATTTGGCGGTTGC GTTGCAGAGGGTTTTGGTGTGTTCTGCGGGGGTTATTGCGGGGGCTGTTGTTGGTGCTGGTGTCGAGAGGGTTACGGTTC TGAGTGTTCCTGTTATGGGTACATTGGTGGTTGCCGGGGTGCCGAGGATGTTGTTTTCGGTTTTTGTGCCGGTTTCGTGC AGTGTGAGTTGTTGGGTTTCGCCGGTGCGGGTTGCGCTGATTGGTGCTGCTGTTGAGGGTGTGACGGGGTGCGTGGTTTC GGCTACGCAGGTGCTGAATAATCGGGTGAAGTATACGTTGACGCATCCTTCGTTTGGGACAAGGGTGTATGAGGTGGTGG TGACGGTGCTGAAGAGTGCGTTGAATACGATTGACCGGTTCTGGTTTGCTGCGGTTGATAATCCGGGTTTATCGGAGGAT GTTGAGGCAACGGTGTCGGATGAGGGTGTTACGGTGATCCTGCCGGACGGGGTGAGTTTGCGGGCGTTGAAACCGACGAT CGAGCCGTCTATTGAGGCTGCGGTTTCTCCTGCTTCGGGTACGGTGACGGATTTTACTGGCCCGGTGGTGTATGTGGTGA CGTCGGAGAGTGGTGAGAGGCGTGAGTTTACGGCAGTGGCGTCGATTGCCCGGGCAACGGGCAAGAGTATTGTGCGGTTC AATATTCTGAAGATTCTTAACCCGGCATTAAGTGCCGACCTGATTGCGGATGTGTGTGAGTCGAACGTGACGGTGATAGC GCCGAGCTATGCTGATGGCGTGGTTGCTGCTTTGAGGCCGACGATACAGATTTCAACGGGGGCGTCGGTTGTTCCGGCGA GTACGCAGGTGAAGGATTTCAGCGGATCGGTATCCTATCGCCTGACTGCGGGTGATTTGTCGAAGGCGAGTTATACGGCT GATCTGTATCGGAAGGTTGATGTTGGGTCGCCTCCGACTGCCGGAGAGGTTACGGTTACGGATGGAGCGTTCACGATGCT TGGTAGCGGGTTGGATATCTGGGGAACATCTGATCAGTTCCATTATCTTTACAGGAAAATGTCGGGCGATTGTGTGGCTG AAGTGCTGCTGGAGTCGCAGCAGGCGACGAATGATTGGGCGAAGGCGGGGTTGATGGTGCGGACTACGCTTCTGGAGAGT TCGGTGCATGCGTTTGTGGGGATGGCTCCGTTGCTGGACGGGTCGAACCGGACGTTGTTTGTGATGCATCGGCTGACGAC TGGCGGGGCAAGCGCGATGCCGTTTCAGGGTGGTGTTGATGGGCCTCCGATGTGGTTGCGGCTGGAGAAGGTCGGGACGG AAATCCGGGCGTACCGGAAGACGGTTGCGGGGAGTTCGTGGACGCTGGTGCAGAGCGTGACGGTGCCGCTGATCGGGAGT ACGGCTTATGTGGGGTTTGCGGTGTGCAGCAAGACGACCGGGCTTGGGGAGTGCGTGTTCAGGGGGTTACGGGTGGGGTG A
Upstream 100 bases:
>100_bases GATGTTGATCGGAAACGGTGCCTGATGGCGTTTCATGGGCGGTTCAGAAGTGATAAACGGCAGGTGCTGCCTACTGTTGA GGATGAGATTGAGGTGACGG
Downstream 100 bases:
>100_bases TGGTGAGGGTGACGGGGTAACAAAAAAGGCTCTGTACAAATACAGAGCCTTAAAAAAAGACACCATGCTAAATTGATTTT CTCTTGCATGGCGGCCACCG
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Pectate Lyase; Beta-Agarase; Alpha-N-Acetylglucosaminidase; Cellulosome Protein Dockerin Type I; Fibronectin Type III Domain Protein; Glycoside Hydrolase Family
Number of amino acids: Translated: 826; Mature: 825
Protein sequence:
>826_residues MAETAWLVAGSVTQVADGNVAWSSMGNVAVSDDLYATVTLSKNTYSHTLRLTGFSPGIPGSATNIRMELAVERKASASGL VDNLVQWFNGSERSGDNKASSANWPTGDGVASYGSSSDSWNSGITAALANSAASGFDVSVYNGGLLTNKTASVDQVRVKF YYDPPPVQELSVPVEVSGSLAVSPVLVLNTSVLVACGDGCACEVVKVVNSGAGFALSVSLGVVPVRVGSAAVLVSVLCSV SAGVVVVRNGAGAVIGSVAVVAAAEQVIADQSSVSAAVACLASFSVQAGQVYAAVVPCSAVSSCSAAPVKVMGVGAGFVA SGGVLVSGVEIADVLVPVGLHVDLAVALQRVLVCSAGVIAGAVVGAGVERVTVLSVPVMGTLVVAGVPRMLFSVFVPVSC SVSCWVSPVRVALIGAAVEGVTGCVVSATQVLNNRVKYTLTHPSFGTRVYEVVVTVLKSALNTIDRFWFAAVDNPGLSED VEATVSDEGVTVILPDGVSLRALKPTIEPSIEAAVSPASGTVTDFTGPVVYVVTSESGERREFTAVASIARATGKSIVRF NILKILNPALSADLIADVCESNVTVIAPSYADGVVAALRPTIQISTGASVVPASTQVKDFSGSVSYRLTAGDLSKASYTA DLYRKVDVGSPPTAGEVTVTDGAFTMLGSGLDIWGTSDQFHYLYRKMSGDCVAEVLLESQQATNDWAKAGLMVRTTLLES SVHAFVGMAPLLDGSNRTLFVMHRLTTGGASAMPFQGGVDGPPMWLRLEKVGTEIRAYRKTVAGSSWTLVQSVTVPLIGS TAYVGFAVCSKTTGLGECVFRGLRVG
Sequences:
>Translated_826_residues MAETAWLVAGSVTQVADGNVAWSSMGNVAVSDDLYATVTLSKNTYSHTLRLTGFSPGIPGSATNIRMELAVERKASASGL VDNLVQWFNGSERSGDNKASSANWPTGDGVASYGSSSDSWNSGITAALANSAASGFDVSVYNGGLLTNKTASVDQVRVKF YYDPPPVQELSVPVEVSGSLAVSPVLVLNTSVLVACGDGCACEVVKVVNSGAGFALSVSLGVVPVRVGSAAVLVSVLCSV SAGVVVVRNGAGAVIGSVAVVAAAEQVIADQSSVSAAVACLASFSVQAGQVYAAVVPCSAVSSCSAAPVKVMGVGAGFVA SGGVLVSGVEIADVLVPVGLHVDLAVALQRVLVCSAGVIAGAVVGAGVERVTVLSVPVMGTLVVAGVPRMLFSVFVPVSC SVSCWVSPVRVALIGAAVEGVTGCVVSATQVLNNRVKYTLTHPSFGTRVYEVVVTVLKSALNTIDRFWFAAVDNPGLSED VEATVSDEGVTVILPDGVSLRALKPTIEPSIEAAVSPASGTVTDFTGPVVYVVTSESGERREFTAVASIARATGKSIVRF NILKILNPALSADLIADVCESNVTVIAPSYADGVVAALRPTIQISTGASVVPASTQVKDFSGSVSYRLTAGDLSKASYTA DLYRKVDVGSPPTAGEVTVTDGAFTMLGSGLDIWGTSDQFHYLYRKMSGDCVAEVLLESQQATNDWAKAGLMVRTTLLES SVHAFVGMAPLLDGSNRTLFVMHRLTTGGASAMPFQGGVDGPPMWLRLEKVGTEIRAYRKTVAGSSWTLVQSVTVPLIGS TAYVGFAVCSKTTGLGECVFRGLRVG >Mature_825_residues AETAWLVAGSVTQVADGNVAWSSMGNVAVSDDLYATVTLSKNTYSHTLRLTGFSPGIPGSATNIRMELAVERKASASGLV DNLVQWFNGSERSGDNKASSANWPTGDGVASYGSSSDSWNSGITAALANSAASGFDVSVYNGGLLTNKTASVDQVRVKFY YDPPPVQELSVPVEVSGSLAVSPVLVLNTSVLVACGDGCACEVVKVVNSGAGFALSVSLGVVPVRVGSAAVLVSVLCSVS AGVVVVRNGAGAVIGSVAVVAAAEQVIADQSSVSAAVACLASFSVQAGQVYAAVVPCSAVSSCSAAPVKVMGVGAGFVAS GGVLVSGVEIADVLVPVGLHVDLAVALQRVLVCSAGVIAGAVVGAGVERVTVLSVPVMGTLVVAGVPRMLFSVFVPVSCS VSCWVSPVRVALIGAAVEGVTGCVVSATQVLNNRVKYTLTHPSFGTRVYEVVVTVLKSALNTIDRFWFAAVDNPGLSEDV EATVSDEGVTVILPDGVSLRALKPTIEPSIEAAVSPASGTVTDFTGPVVYVVTSESGERREFTAVASIARATGKSIVRFN ILKILNPALSADLIADVCESNVTVIAPSYADGVVAALRPTIQISTGASVVPASTQVKDFSGSVSYRLTAGDLSKASYTAD LYRKVDVGSPPTAGEVTVTDGAFTMLGSGLDIWGTSDQFHYLYRKMSGDCVAEVLLESQQATNDWAKAGLMVRTTLLESS VHAFVGMAPLLDGSNRTLFVMHRLTTGGASAMPFQGGVDGPPMWLRLEKVGTEIRAYRKTVAGSSWTLVQSVTVPLIGST AYVGFAVCSKTTGLGECVFRGLRVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84514; Mature: 84383
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAETAWLVAGSVTQVADGNVAWSSMGNVAVSDDLYATVTLSKNTYSHTLRLTGFSPGIPG CCCCEEEEECCEEEECCCCEEECCCCCEEECCCEEEEEEEECCCEEEEEEEECCCCCCCC SATNIRMELAVERKASASGLVDNLVQWFNGSERSGDNKASSANWPTGDGVASYGSSSDSW CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC NSGITAALANSAASGFDVSVYNGGLLTNKTASVDQVRVKFYYDPPPVQELSVPVEVSGSL CCCCHHHHHCCCCCCCEEEEECCCEEECCCCCCEEEEEEEEECCCCHHHCCCCEEECCCE AVSPVLVLNTSVLVACGDGCACEVVKVVNSGAGFALSVSLGVVPVRVGSAAVLVSVLCSV EECEEEEECCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECEEEEECCCHHHHHHHHHHC SAGVVVVRNGAGAVIGSVAVVAAAEQVIADQSSVSAAVACLASFSVQAGQVYAAVVPCSA CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCHH VSSCSAAPVKVMGVGAGFVASGGVLVSGVEIADVLVPVGLHVDLAVALQRVLVCSAGVIA HCCCCCCCEEEEEECCCHHCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCHHHH GAVVGAGVERVTVLSVPVMGTLVVAGVPRMLFSVFVPVSCSVSCWVSPVRVALIGAAVEG HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VTGCVVSATQVLNNRVKYTLTHPSFGTRVYEVVVTVLKSALNTIDRFWFAAVDNPGLSED HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC VEATVSDEGVTVILPDGVSLRALKPTIEPSIEAAVSPASGTVTDFTGPVVYVVTSESGER CEEEECCCCEEEEECCCCEEEEECCCCCCCHHHEECCCCCCEEECCCCEEEEEECCCCCC REFTAVASIARATGKSIVRFNILKILNPALSADLIADVCESNVTVIAPSYADGVVAALRP HHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCC TIQISTGASVVPASTQVKDFSGSVSYRLTAGDLSKASYTADLYRKVDVGSPPTAGEVTVT EEEEECCCEECCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHEECCCCCCCCCEEEEE DGAFTMLGSGLDIWGTSDQFHYLYRKMSGDCVAEVLLESQQATNDWAKAGLMVRTTLLES CCCHHHHCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHCCHHEEHHHHHH SVHAFVGMAPLLDGSNRTLFVMHRLTTGGASAMPFQGGVDGPPMWLRLEKVGTEIRAYRK HHHHHHHHHHEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH TVAGSSWTLVQSVTVPLIGSTAYVGFAVCSKTTGLGECVFRGLRVG HHCCCCEEEEEEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHCCCC >Mature Secondary Structure AETAWLVAGSVTQVADGNVAWSSMGNVAVSDDLYATVTLSKNTYSHTLRLTGFSPGIPG CCCEEEEECCEEEECCCCEEECCCCCEEECCCEEEEEEEECCCEEEEEEEECCCCCCCC SATNIRMELAVERKASASGLVDNLVQWFNGSERSGDNKASSANWPTGDGVASYGSSSDSW CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC NSGITAALANSAASGFDVSVYNGGLLTNKTASVDQVRVKFYYDPPPVQELSVPVEVSGSL CCCCHHHHHCCCCCCCEEEEECCCEEECCCCCCEEEEEEEEECCCCHHHCCCCEEECCCE AVSPVLVLNTSVLVACGDGCACEVVKVVNSGAGFALSVSLGVVPVRVGSAAVLVSVLCSV EECEEEEECCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECEEEEECCCHHHHHHHHHHC SAGVVVVRNGAGAVIGSVAVVAAAEQVIADQSSVSAAVACLASFSVQAGQVYAAVVPCSA CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCHH VSSCSAAPVKVMGVGAGFVASGGVLVSGVEIADVLVPVGLHVDLAVALQRVLVCSAGVIA HCCCCCCCEEEEEECCCHHCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCHHHH GAVVGAGVERVTVLSVPVMGTLVVAGVPRMLFSVFVPVSCSVSCWVSPVRVALIGAAVEG HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VTGCVVSATQVLNNRVKYTLTHPSFGTRVYEVVVTVLKSALNTIDRFWFAAVDNPGLSED HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC VEATVSDEGVTVILPDGVSLRALKPTIEPSIEAAVSPASGTVTDFTGPVVYVVTSESGER CEEEECCCCEEEEECCCCEEEEECCCCCCCHHHEECCCCCCEEECCCCEEEEEECCCCCC REFTAVASIARATGKSIVRFNILKILNPALSADLIADVCESNVTVIAPSYADGVVAALRP HHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCC TIQISTGASVVPASTQVKDFSGSVSYRLTAGDLSKASYTADLYRKVDVGSPPTAGEVTVT EEEEECCCEECCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHEECCCCCCCCCEEEEE DGAFTMLGSGLDIWGTSDQFHYLYRKMSGDCVAEVLLESQQATNDWAKAGLMVRTTLLES CCCHHHHCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHCCHHEEHHHHHH SVHAFVGMAPLLDGSNRTLFVMHRLTTGGASAMPFQGGVDGPPMWLRLEKVGTEIRAYRK HHHHHHHHHHEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH TVAGSSWTLVQSVTVPLIGSTAYVGFAVCSKTTGLGECVFRGLRVG HHCCCCEEEEEEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA