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The map label for this gene is rimM

Identifier: 119357325

GI number: 119357325

Start: 1731604

End: 1732107

Strand: Reverse

Name: rimM

Synonym: Cpha266_1523

Alternate gene names: 119357325

Gene position: 1732107-1731604 (Counterclockwise)

Preceding gene: 119357326

Following gene: 119357324

Centisome position: 55.27

GC content: 46.23

Gene sequence:

>504_bases
ATGGATCTTTTTCTGACCGGTACGATACTTAAGCCGAAAGGGCTGAAGGGAGAGGTTAAAGTCCTTCCGGTAACTGATTT
TCCTGAGCTTTTTTTGTCGCGGAAAAGTTATCTTGCCGGAAAAAGCGACGCGAGCGTTATGCCTCTCAACGTTCTGAAAG
CATCACTCAGCAAAGGATTTGCGTGGCTGTTTTTTGAAGGTGTCGATACTCTTGAAAAAGCTGAAAAGCTTTCCGGGATG
CATCTGTTTGTGGAAGAAAAAGAGCTTGCCCGGCAACCGACCGGGCGGGCTTATCTCCATGAGCTTATAGGCATGAAGGT
TCTTGACGGAAATCGTTATGAGGCGGGTGTTATTTCAGATATTCTGAAAATGCCGGCACATGAGGTGTATGAGGTTCAGG
CAAACGGACGAAAGATTCTGATACCTGCCGTTGAAGAGTTTGTTGAAGAGATTGATATGGCCGGCAGATATATGGTTGTG
CCCCGTTTTGACGAGTTTTTGTGA

Upstream 100 bases:

>100_bases
GAAACGTCTGGTTGTGAAATCCCGTCGCCGTCAGGCTAAAAAAGAGGCTGAGGGAAAAGCTGCCGGCGCTGAAGCTTGAT
CTTCGGCAGGGAGGCTTTTG

Downstream 100 bases:

>100_bases
AAGATTGTTCTTGACAAGATTGTTTCAGGGAATCTCAGTGTATGGATCCGATGCGGATTGATGTTATTTCCGTTATCCCC
GGTTTTTTCGATTCGGCCCT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MDLFLTGTILKPKGLKGEVKVLPVTDFPELFLSRKSYLAGKSDASVMPLNVLKASLSKGFAWLFFEGVDTLEKAEKLSGM
HLFVEEKELARQPTGRAYLHELIGMKVLDGNRYEAGVISDILKMPAHEVYEVQANGRKILIPAVEEFVEEIDMAGRYMVV
PRFDEFL

Sequences:

>Translated_167_residues
MDLFLTGTILKPKGLKGEVKVLPVTDFPELFLSRKSYLAGKSDASVMPLNVLKASLSKGFAWLFFEGVDTLEKAEKLSGM
HLFVEEKELARQPTGRAYLHELIGMKVLDGNRYEAGVISDILKMPAHEVYEVQANGRKILIPAVEEFVEEIDMAGRYMVV
PRFDEFL
>Mature_167_residues
MDLFLTGTILKPKGLKGEVKVLPVTDFPELFLSRKSYLAGKSDASVMPLNVLKASLSKGFAWLFFEGVDTLEKAEKLSGM
HLFVEEKELARQPTGRAYLHELIGMKVLDGNRYEAGVISDILKMPAHEVYEVQANGRKILIPAVEEFVEEIDMAGRYMVV
PRFDEFL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CHLPD (A1BGL8)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_911969.1
- ProteinModelPortal:   A1BGL8
- SMR:   A1BGL8
- STRING:   A1BGL8
- GeneID:   4569573
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_1523
- NMPDR:   fig|290317.7.peg.1604
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   FAWLFFE
- ProtClustDB:   CLSK637625
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18766; Mature: 18766

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFLTGTILKPKGLKGEVKVLPVTDFPELFLSRKSYLAGKSDASVMPLNVLKASLSKGF
CCEEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCE
AWLFFEGVDTLEKAEKLSGMHLFVEEKELARQPTGRAYLHELIGMKVLDGNRYEAGVISD
EEEEECCHHHHHHHHHCCCCEEEEECHHHHCCCCCHHHHHHHHCEEEECCCCCCHHHHHH
ILKMPAHEVYEVQANGRKILIPAVEEFVEEIDMAGRYMVVPRFDEFL
HHHCCCCCEEEEECCCCEEEEHHHHHHHHHHHCCCCEEEECCHHHCC
>Mature Secondary Structure
MDLFLTGTILKPKGLKGEVKVLPVTDFPELFLSRKSYLAGKSDASVMPLNVLKASLSKGF
CCEEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCE
AWLFFEGVDTLEKAEKLSGMHLFVEEKELARQPTGRAYLHELIGMKVLDGNRYEAGVISD
EEEEECCHHHHHHHHHCCCCEEEEECHHHHCCCCCHHHHHHHHCEEEECCCCCCHHHHHH
ILKMPAHEVYEVQANGRKILIPAVEEFVEEIDMAGRYMVVPRFDEFL
HHHCCCCCEEEEECCCCEEEEHHHHHHHHHHHCCCCEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA