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The map label for this gene is vhcD [H]

Identifier: 119357072

GI number: 119357072

Start: 1431290

End: 1431739

Strand: Reverse

Name: vhcD [H]

Synonym: Cpha266_1259

Alternate gene names: 119357072

Gene position: 1431739-1431290 (Counterclockwise)

Preceding gene: 119357073

Following gene: 119357071

Centisome position: 45.69

GC content: 51.11

Gene sequence:

>450_bases
ATGAGTGAACCATTTGAACCGAAAATCGTCGCATTTGTCTGTACCTACTGTACCTATGCCGGCGCAGACCTGGCGGGTAC
AAGCCGGCTCAAGTACGCACCGAACATCAGAATTGTCCGTTTGCCCTGTACAGGAAGAATCAGCCCAATGTTTATTCTCA
AGGCTCTGCAAAAAGGGGCCGATGGCGTGCTTGTAAGCGGTTGTCATCCGGGGGACTGCCATTTCACCCACGGAAACTTT
CATGCAAGAAGACGATGGACGGTATTTCGGGCTCTCCTGAGCTTTACAGGCATACCTGTCGAACGAATCAAGTTTTCATG
GATCAGCGCGGCTGAAGGCGCCAAGTTTGCTGAATTCGTCAACACGCTGACCGAGGAAATTCGCAGCCTTGGACCTTTTG
AACAGTACAAGGAGTTGATCAACGAAACCGAGGCCCCGGCATCACATTAA

Upstream 100 bases:

>100_bases
CCGAAAGACAGATTTTTGCTGAAGTCATGGGCCTTTAAACGGAATGAACTTCGAATAATTACCATGAACAAACAGAACCC
CGTTACCAGTGAGTACCGCT

Downstream 100 bases:

>100_bases
AACCATGCAATGAGTATTCAGGAACAGTACAGACAAAAAGCAAATGAGCTGCTTTCAAGCGGCACAGTGAAAATGGTGAT
CGGGTATGGATCCGGATCCA

Product: methyl-viologen-reducing hydrogenase, delta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSEPFEPKIVAFVCTYCTYAGADLAGTSRLKYAPNIRIVRLPCTGRISPMFILKALQKGADGVLVSGCHPGDCHFTHGNF
HARRRWTVFRALLSFTGIPVERIKFSWISAAEGAKFAEFVNTLTEEIRSLGPFEQYKELINETEAPASH

Sequences:

>Translated_149_residues
MSEPFEPKIVAFVCTYCTYAGADLAGTSRLKYAPNIRIVRLPCTGRISPMFILKALQKGADGVLVSGCHPGDCHFTHGNF
HARRRWTVFRALLSFTGIPVERIKFSWISAAEGAKFAEFVNTLTEEIRSLGPFEQYKELINETEAPASH
>Mature_148_residues
SEPFEPKIVAFVCTYCTYAGADLAGTSRLKYAPNIRIVRLPCTGRISPMFILKALQKGADGVLVSGCHPGDCHFTHGNFH
ARRRWTVFRALLSFTGIPVERIKFSWISAAEGAKFAEFVNTLTEEIRSLGPFEQYKELINETEAPASH

Specific function: Unknown

COG id: COG1908

COG function: function code C; Coenzyme F420-reducing hydrogenase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mvhD/vhuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003813 [H]

Pfam domain/function: PF02662 FlpD [H]

EC number: NA

Molecular weight: Translated: 16595; Mature: 16464

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPFEPKIVAFVCTYCTYAGADLAGTSRLKYAPNIRIVRLPCTGRISPMFILKALQKGA
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHCCC
DGVLVSGCHPGDCHFTHGNFHARRRWTVFRALLSFTGIPVERIKFSWISAAEGAKFAEFV
CCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHH
NTLTEEIRSLGPFEQYKELINETEAPASH
HHHHHHHHCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SEPFEPKIVAFVCTYCTYAGADLAGTSRLKYAPNIRIVRLPCTGRISPMFILKALQKGA
CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHCCC
DGVLVSGCHPGDCHFTHGNFHARRRWTVFRALLSFTGIPVERIKFSWISAAEGAKFAEFV
CCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHH
NTLTEEIRSLGPFEQYKELINETEAPASH
HHHHHHHHCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]