| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357067
Identifier: 119357067
GI number: 119357067
Start: 1425769
End: 1426581
Strand: Reverse
Name: 119357067
Synonym: Cpha266_1254
Alternate gene names: NA
Gene position: 1426581-1425769 (Counterclockwise)
Preceding gene: 119357069
Following gene: 119357064
Centisome position: 45.52
GC content: 46.99
Gene sequence:
>813_bases ATGGCAAAAAAAGCATTGTGTGTGGGAATTAACAGATTCAAAAACTACGCAAGCGCAACGCTCAATGGCTGTGTTAACGA TGCCAATGAGATGAAAAGTCTGCTTGTAGACTACTTCGGATTCACAAGCAACAGTGTCAAAATACTTACGAACGCGAAAG CCACAAAGGCGGCCATCATGACCGAGTTGAGCAAAATGGTTAACGGGGCAATTGCAGGAAAATATGACGCACTTGTGTTC AGTCTTTCAAGCCATGGCACACAGGTGCCCGATACAAGCGGAGATGAACCGGACAGGTCAGACGAAGCATTTTGCCCCTA CGATCTTGCCCAGCAGGAAGATCAGTGGCATCCGGATCACATCATTACCGATGACGAACTTAACTCGCTTTTTGTTTCTC TGCCTGATAAGGTAACCCTTGAGGTGTATCTTGATACCTGCCATAGCGGAACGGGACTCAAAGCCATTGATTTTCTTCTT CAGCGTAAACCCCGTTATCTTCCCCCGCCCTCTCTTGATGGATTTCTCGATCTTGAAAGCCGCACTCTTCGCAGTTTCGG TCAACTCAAAGAGAAAATGCCCCTGACAAAAAAACACACCCTGTGGACTGGTTGCAAATCATCCGAAACCAGTGCAGACG CCCTGATTGAGGGGAAATGGCATGGAGCATTTACCTATTATTACTCGACTGAACTTCGCAAGAGCAAAAACACGCTATCG AAAGATGCTCTCCTGAAATTAATCAGAGCAGATCTTAAGGCTGGCCGTTATACGCAAACCCCACAGCTCGAGTACAATGC AACGGCAAGGTAG
Upstream 100 bases:
>100_bases TTTGCTCTTAAGGACGAATCATGTACATTTACGTTACATTTCCTATCTTGTTCGCTTACCGAATCCATAGTCTGCAACAC ATCCTAAACGGAGAACCATT
Downstream 100 bases:
>100_bases GATAAAGGCGAAGGTATCTGCCTTACTGAAGAGTACAGAAGCTGATCCCGTATAGATACTCTGCCAAAAACAAGGTGTAT CCCCCCTCAAGGATACACCT
Product: peptidase C14, caspase catalytic subunit p20
Products: NA
Alternate protein names: Metacaspase; Caspase Domain Protein
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MAKKALCVGINRFKNYASATLNGCVNDANEMKSLLVDYFGFTSNSVKILTNAKATKAAIMTELSKMVNGAIAGKYDALVF SLSSHGTQVPDTSGDEPDRSDEAFCPYDLAQQEDQWHPDHIITDDELNSLFVSLPDKVTLEVYLDTCHSGTGLKAIDFLL QRKPRYLPPPSLDGFLDLESRTLRSFGQLKEKMPLTKKHTLWTGCKSSETSADALIEGKWHGAFTYYYSTELRKSKNTLS KDALLKLIRADLKAGRYTQTPQLEYNATAR
Sequences:
>Translated_270_residues MAKKALCVGINRFKNYASATLNGCVNDANEMKSLLVDYFGFTSNSVKILTNAKATKAAIMTELSKMVNGAIAGKYDALVF SLSSHGTQVPDTSGDEPDRSDEAFCPYDLAQQEDQWHPDHIITDDELNSLFVSLPDKVTLEVYLDTCHSGTGLKAIDFLL QRKPRYLPPPSLDGFLDLESRTLRSFGQLKEKMPLTKKHTLWTGCKSSETSADALIEGKWHGAFTYYYSTELRKSKNTLS KDALLKLIRADLKAGRYTQTPQLEYNATAR >Mature_269_residues AKKALCVGINRFKNYASATLNGCVNDANEMKSLLVDYFGFTSNSVKILTNAKATKAAIMTELSKMVNGAIAGKYDALVFS LSSHGTQVPDTSGDEPDRSDEAFCPYDLAQQEDQWHPDHIITDDELNSLFVSLPDKVTLEVYLDTCHSGTGLKAIDFLLQ RKPRYLPPPSLDGFLDLESRTLRSFGQLKEKMPLTKKHTLWTGCKSSETSADALIEGKWHGAFTYYYSTELRKSKNTLSK DALLKLIRADLKAGRYTQTPQLEYNATAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6324771, Length=302, Percent_Identity=28.476821192053, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30051; Mature: 29920
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKALCVGINRFKNYASATLNGCVNDANEMKSLLVDYFGFTSNSVKILTNAKATKAAIM CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH TELSKMVNGAIAGKYDALVFSLSSHGTQVPDTSGDEPDRSDEAFCPYDLAQQEDQWHPDH HHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC IITDDELNSLFVSLPDKVTLEVYLDTCHSGTGLKAIDFLLQRKPRYLPPPSLDGFLDLES CCCCHHHHHHEEECCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECHH RTLRSFGQLKEKMPLTKKHTLWTGCKSSETSADALIEGKWHGAFTYYYSTELRKSKNTLS HHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEECCCCCEEEEEEEHHHHHHHHHHH KDALLKLIRADLKAGRYTQTPQLEYNATAR HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure AKKALCVGINRFKNYASATLNGCVNDANEMKSLLVDYFGFTSNSVKILTNAKATKAAIM CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH TELSKMVNGAIAGKYDALVFSLSSHGTQVPDTSGDEPDRSDEAFCPYDLAQQEDQWHPDH HHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC IITDDELNSLFVSLPDKVTLEVYLDTCHSGTGLKAIDFLLQRKPRYLPPPSLDGFLDLES CCCCHHHHHHEEECCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECHH RTLRSFGQLKEKMPLTKKHTLWTGCKSSETSADALIEGKWHGAFTYYYSTELRKSKNTLS HHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEECCCCCEEEEEEEHHHHHHHHHHH KDALLKLIRADLKAGRYTQTPQLEYNATAR HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA