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The map label for this gene is oprF [H]

Identifier: 119357024

GI number: 119357024

Start: 1375935

End: 1377044

Strand: Reverse

Name: oprF [H]

Synonym: Cpha266_1209

Alternate gene names: 119357024

Gene position: 1377044-1375935 (Counterclockwise)

Preceding gene: 119357025

Following gene: 119357021

Centisome position: 43.94

GC content: 45.68

Gene sequence:

>1110_bases
ATGAAATTTGTATCGAGAAACTTTCCGATTCTTGCCCTGATGACGCTTTTTATGTTTGGGCAATTGTCGTCAGCCTTCGC
AAAACAAACCGGATCAAACAAAGCCGACATAGTATGGAACAGGTATGATTTTGTTCCTGGCGATAAAATCATATTCGAAG
ACAACCAGGAAACGGAGTCTAACGGAGAGTTCCCTTCAAAATGGGAGCTTGTCGATAAAGACAATATTGAAATCGCTACC
GTCAACGGCAATAATGTTCTGTATTTCATCAAATGCAATATGAACAGCGGAGGCGGACTCGTTCCTCGCATGAAAAATAC
AGGTATCGACTACCTGCCCGATGAGTTTACCGTAGAATTCGATGCCTACTTTGAAAACAGCAACAAACCTGCGTATTATC
TCTACCTGACAGACACAAAACATCAGCGGAAACTCGAAAAAACAGCTCCGTCGAAAACCCCGCACAATCACAGAAATATT
CAGTTTGATCGAGTCATGGCAAAAGTCTATGGAGGAGCGGCAAACTATTACCCCGGCATGACCGCCACAAGCAAACCTCC
TTCTATGTGGAGGCATTTTGCGATATCATATAATAAAGGCTATGTGAAAGTCTATATCGACGACGCAAGGGTTCTTACCA
TTCCCGATCTCGGATACAATCCGACGGGAATCGGCATCGGAAGCCATATTACCGGCACAAAAAATAAAGGCTATATCAAG
AATGTCCGCATTGCTGCCGGGAGCGTCAAGCTTTACAACAGCCTCATGGCAAAAGGACGTATTGCCACAACCGGCATAAA
ATTCGATACCGGCAACGCGACGTTGAAACCCGAATCCAATGGCGTAATCAATGAGATAGTCAAGATGATGAATACCTATC
CCGTCATACGATTGCGTATCGAAGGACACACGGACAGCGACGGCGACACTTCTGCCAATCAGATTCTTTCAGAAAAACGT
TCAGCAGCGGTAAAGGCAGCACTGATAAAACGGGGTATCGCGGCTGTACGTCTGTCGATCTCATCGTTCGGCGAAACAAA
ACCGGTAGCTGACAACACGACATCGGAAGGAAAAGCCAACAACCGCCGGGTAGAGTTCGTAAAACTCTGA

Upstream 100 bases:

>100_bases
TATAATCAGCAGCTCATAACGTTAACCATCACAAGCATGGATATTCAGCCGCCACTCGGCAATCCTGCTTACAAATCCTG
CAAATACATTCCATTCAGTC

Downstream 100 bases:

>100_bases
GTGAACGGCTCATTCGATTCTGCGACATAATCCCGAATTCATGCCGAAAACATCATAAAAGCGAAGAGCCCGACAGATTT
TATCGCTATCTGTCGGGCTC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKFVSRNFPILALMTLFMFGQLSSAFAKQTGSNKADIVWNRYDFVPGDKIIFEDNQETESNGEFPSKWELVDKDNIEIAT
VNGNNVLYFIKCNMNSGGGLVPRMKNTGIDYLPDEFTVEFDAYFENSNKPAYYLYLTDTKHQRKLEKTAPSKTPHNHRNI
QFDRVMAKVYGGAANYYPGMTATSKPPSMWRHFAISYNKGYVKVYIDDARVLTIPDLGYNPTGIGIGSHITGTKNKGYIK
NVRIAAGSVKLYNSLMAKGRIATTGIKFDTGNATLKPESNGVINEIVKMMNTYPVIRLRIEGHTDSDGDTSANQILSEKR
SAAVKAALIKRGIAAVRLSISSFGETKPVADNTTSEGKANNRRVEFVKL

Sequences:

>Translated_369_residues
MKFVSRNFPILALMTLFMFGQLSSAFAKQTGSNKADIVWNRYDFVPGDKIIFEDNQETESNGEFPSKWELVDKDNIEIAT
VNGNNVLYFIKCNMNSGGGLVPRMKNTGIDYLPDEFTVEFDAYFENSNKPAYYLYLTDTKHQRKLEKTAPSKTPHNHRNI
QFDRVMAKVYGGAANYYPGMTATSKPPSMWRHFAISYNKGYVKVYIDDARVLTIPDLGYNPTGIGIGSHITGTKNKGYIK
NVRIAAGSVKLYNSLMAKGRIATTGIKFDTGNATLKPESNGVINEIVKMMNTYPVIRLRIEGHTDSDGDTSANQILSEKR
SAAVKAALIKRGIAAVRLSISSFGETKPVADNTTSEGKANNRRVEFVKL
>Mature_369_residues
MKFVSRNFPILALMTLFMFGQLSSAFAKQTGSNKADIVWNRYDFVPGDKIIFEDNQETESNGEFPSKWELVDKDNIEIAT
VNGNNVLYFIKCNMNSGGGLVPRMKNTGIDYLPDEFTVEFDAYFENSNKPAYYLYLTDTKHQRKLEKTAPSKTPHNHRNI
QFDRVMAKVYGGAANYYPGMTATSKPPSMWRHFAISYNKGYVKVYIDDARVLTIPDLGYNPTGIGIGSHITGTKNKGYIK
NVRIAAGSVKLYNSLMAKGRIATTGIKFDTGNATLKPESNGVINEIVKMMNTYPVIRLRIEGHTDSDGDTSANQILSEKR
SAAVKAALIKRGIAAVRLSISSFGETKPVADNTTSEGKANNRRVEFVKL

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=101, Percent_Identity=38.6138613861386, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 41053; Mature: 41053

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVSRNFPILALMTLFMFGQLSSAFAKQTGSNKADIVWNRYDFVPGDKIIFEDNQETES
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCC
NGEFPSKWELVDKDNIEIATVNGNNVLYFIKCNMNSGGGLVPRMKNTGIDYLPDEFTVEF
CCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
DAYFENSNKPAYYLYLTDTKHQRKLEKTAPSKTPHNHRNIQFDRVMAKVYGGAANYYPGM
EEEEECCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
TATSKPPSMWRHFAISYNKGYVKVYIDDARVLTIPDLGYNPTGIGIGSHITGTKNKGYIK
CCCCCCHHHHEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
NVRIAAGSVKLYNSLMAKGRIATTGIKFDTGNATLKPESNGVINEIVKMMNTYPVIRLRI
EEEEEECHHHHHHHHHHCCCEEEEEEEEECCCEEECCCCCCHHHHHHHHHCCCCEEEEEE
EGHTDSDGDTSANQILSEKRSAAVKAALIKRGIAAVRLSISSFGETKPVADNTTSEGKAN
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCC
NRRVEFVKL
CCEEEEEEC
>Mature Secondary Structure
MKFVSRNFPILALMTLFMFGQLSSAFAKQTGSNKADIVWNRYDFVPGDKIIFEDNQETES
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCC
NGEFPSKWELVDKDNIEIATVNGNNVLYFIKCNMNSGGGLVPRMKNTGIDYLPDEFTVEF
CCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
DAYFENSNKPAYYLYLTDTKHQRKLEKTAPSKTPHNHRNIQFDRVMAKVYGGAANYYPGM
EEEEECCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
TATSKPPSMWRHFAISYNKGYVKVYIDDARVLTIPDLGYNPTGIGIGSHITGTKNKGYIK
CCCCCCHHHHEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
NVRIAAGSVKLYNSLMAKGRIATTGIKFDTGNATLKPESNGVINEIVKMMNTYPVIRLRI
EEEEEECHHHHHHHHHHCCCEEEEEEEEECCCEEECCCCCCHHHHHHHHHCCCCEEEEEE
EGHTDSDGDTSANQILSEKRSAAVKAALIKRGIAAVRLSISSFGETKPVADNTTSEGKAN
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCC
NRRVEFVKL
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]