| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is f1pep1 [H]
Identifier: 119356837
GI number: 119356837
Start: 1148313
End: 1150511
Strand: Reverse
Name: f1pep1 [H]
Synonym: Cpha266_1010
Alternate gene names: 119356837
Gene position: 1150511-1148313 (Counterclockwise)
Preceding gene: 119356838
Following gene: 119356834
Centisome position: 36.71
GC content: 49.16
Gene sequence:
>2199_bases ATGACAATACCACGTACCGCGCTCTTTTTGTTATGCTTTCTTGCCCTCACTTCTGCGGCTTTCGCTGTAGAAAAACCTGA ACCTGTTGTTATAAGAAAATCCTTTCCGGAAGCTCAAAAACCTGTTGTGGAAACATGGTGCGGCGAAACAATAGCTGATC CTTTCCGCGCGATGGAGAACATCAGAAACCCGCAAGTCATCAACTGGCTCAAGCAGGAGAGCGACTATGCCCGCAATACC CTGCAACGAATTCCCGGAAGAGATAGTCTCATCTCCAAAATGCAGGAATTTGACAAAAGAAAGGTCTCGAAAGTCTATAA TCTCTCGATTACCGAAAACGACGTCTATTTTTATCTCAAACAGACGCCGTCGGACGAAACAGGCCAGCTCTACTACAGAA AAGGGTTCCATGGCAAAGAAACCCTGCTGTTCAACCCCTCTTCATCACCTGATAAAGAGAGCCACACGGTTATAGGTACC ATTTCTCCCTCATTTGACGGATCAAAGGTCGCATTTACCATTTCAAAAAACGGCTCAGAGGATGCGGTTCTCCTGATTAT GGATGTTGCGACAAAAAAGCTGTTTCCGGAAAAAATCACAAGGTGCCGGTTTGCATCGCCATCATGGCTCAAAACTGGCG ATGCATTTCTTTACAATCGCCTGCGGGCTCTTGAAAAGCCTGGCGAAAATCCACAGCACAACAGCAAAACATTTCTCCAT ATACCCGGAACGGACCCGTCAAGAGACCTTGAAATTTTTTCAAGCGCAACAAACCCTGAACTTGTTCTTAATCCGGAAGA TATTCCCGAAGTGAGTTATGAGAAGGAGAGCGGGCAACTGTTTGCATTTCTCTCAAATGTAGACCGCCGCCTGACAGTTT ACTATGCGCCCCTCGATCAGCCTGGAAAAAAGAAAACAGCCTGGAAAAAGCTCTTTATCCCGAAAGATGATGTCCACGAT TTTGCTGTCACGGAGAAGGATATCTACTTTTCATCGCCAAAAAAAGCATCTGGTTTCCGGTTATTGAAAACATCCCTTGA GCATCCCGATCTTGAGCATGCCGAATTGATCGTTCCGGAAACTCCTGGAGCCACGCTAACCGGATTCACGCTCACCAGCA GGGGCATCTTCTACACACAATCGAAAAACGGCGTCGAAGAAAAACTCTATCATCAGGAGTACGGAAAAACAGAATCAAAA GAGATCATCCTGCCTTCCGCTGCCGGAACCATTGCGTTAAGCAGCAAAGGATTCCGCTACCCCGACCTCTGGGTGGTCAT CGCAGGCTGGAGCAAAGACTACCGACGCTACCGATATGATAGCCGAAACGAAGGAACCTTCAGCCTTGAAACACTCTCAT CCCCCGCCTTGTACCCGGAATATGAGCGACTGAAAGTCGAAGAACTCATGATACCCTCACACGATGGGGTTATGGTCCCG CTGTCGATTGTGTACCGGAATGATCTTGATAAAAAAGGAACCAATCCCGTTCTGCTCTACGGCTATGGGGCCTATGGCAA CGCTCTGACACCTTTTTTCAGCCCATCACTACTGCTCTGGACTCATAAAGGCGGCATTCTTGCCATCGTGCACGCAAGAG GCGGCGGAGAGCTTGGTGATGCATGGCATACATCGGGAATGAAAACCACGAAGCCGAACACATGGAAAGACCTCATAAGT TCCGCCGAGTACCTGATCAAGGAGAAATACTCTTCATCTCGACATATCGCAATCAATGGCGCCAGTGCCGGCGGCATTCT TGTAGGAAAAGCCATGACCGAACGTCCGGATCTTTTTGCCGCAGCGATTCCGCAGGTTGGACTGATGAACCCCCTGCGGG GTGAGGAAACGCCGAATGGTCCGGTCAACGTACCAGAGTTCGGCACGGTCAAGAAGCCCGATGAATGCAAAGCGCTCATT GCCATGGATCCCTATCTTTCCATTATTGATGGAGTCCGATACCCGGCTGCACTGGTTACAGCAGGAATCAACGATCCAAG AGTCAGTGCCTGGCAGCCTGCGAAATTCGCCGCCCGTCTTCAGGCTGCGACAGCCTCAAACAAACCGGTTCTTCTGTTCA CCGATTTCAAGGCCGGACACGGCATGGGAAACACGAAACAGATGGAGTTTGAATCCCTTGCCGATGTATTGAGTTTCGGA CTGTGGCAAACCGGCCATCCTGAATTTCAAATCAGGTAA
Upstream 100 bases:
>100_bases CCCCACCACTAAAAAAGCCATGCAGAAACAGCATGGCTTTTTTTATGGGCATCGCTCACTGAAAGCTCTTTTCAGATAAT CCGCAACAGCCTTGATTACC
Downstream 100 bases:
>100_bases CCCGGCAACAACTCATCCTGTTCAGTATTACTGAACCCCTGAAACCGATCCGGCACAAGCCCTTTAAGATAGAGTTGCCG TTTCTCCTCCGCAAACCGTT
Product: oligopeptidase B
Products: NA
Alternate protein names: Post-proline cleaving enzyme; Proline-specific endopeptidase; PE; PSE [H]
Number of amino acids: Translated: 732; Mature: 731
Protein sequence:
>732_residues MTIPRTALFLLCFLALTSAAFAVEKPEPVVIRKSFPEAQKPVVETWCGETIADPFRAMENIRNPQVINWLKQESDYARNT LQRIPGRDSLISKMQEFDKRKVSKVYNLSITENDVYFYLKQTPSDETGQLYYRKGFHGKETLLFNPSSSPDKESHTVIGT ISPSFDGSKVAFTISKNGSEDAVLLIMDVATKKLFPEKITRCRFASPSWLKTGDAFLYNRLRALEKPGENPQHNSKTFLH IPGTDPSRDLEIFSSATNPELVLNPEDIPEVSYEKESGQLFAFLSNVDRRLTVYYAPLDQPGKKKTAWKKLFIPKDDVHD FAVTEKDIYFSSPKKASGFRLLKTSLEHPDLEHAELIVPETPGATLTGFTLTSRGIFYTQSKNGVEEKLYHQEYGKTESK EIILPSAAGTIALSSKGFRYPDLWVVIAGWSKDYRRYRYDSRNEGTFSLETLSSPALYPEYERLKVEELMIPSHDGVMVP LSIVYRNDLDKKGTNPVLLYGYGAYGNALTPFFSPSLLLWTHKGGILAIVHARGGGELGDAWHTSGMKTTKPNTWKDLIS SAEYLIKEKYSSSRHIAINGASAGGILVGKAMTERPDLFAAAIPQVGLMNPLRGEETPNGPVNVPEFGTVKKPDECKALI AMDPYLSIIDGVRYPAALVTAGINDPRVSAWQPAKFAARLQAATASNKPVLLFTDFKAGHGMGNTKQMEFESLADVLSFG LWQTGHPEFQIR
Sequences:
>Translated_732_residues MTIPRTALFLLCFLALTSAAFAVEKPEPVVIRKSFPEAQKPVVETWCGETIADPFRAMENIRNPQVINWLKQESDYARNT LQRIPGRDSLISKMQEFDKRKVSKVYNLSITENDVYFYLKQTPSDETGQLYYRKGFHGKETLLFNPSSSPDKESHTVIGT ISPSFDGSKVAFTISKNGSEDAVLLIMDVATKKLFPEKITRCRFASPSWLKTGDAFLYNRLRALEKPGENPQHNSKTFLH IPGTDPSRDLEIFSSATNPELVLNPEDIPEVSYEKESGQLFAFLSNVDRRLTVYYAPLDQPGKKKTAWKKLFIPKDDVHD FAVTEKDIYFSSPKKASGFRLLKTSLEHPDLEHAELIVPETPGATLTGFTLTSRGIFYTQSKNGVEEKLYHQEYGKTESK EIILPSAAGTIALSSKGFRYPDLWVVIAGWSKDYRRYRYDSRNEGTFSLETLSSPALYPEYERLKVEELMIPSHDGVMVP LSIVYRNDLDKKGTNPVLLYGYGAYGNALTPFFSPSLLLWTHKGGILAIVHARGGGELGDAWHTSGMKTTKPNTWKDLIS SAEYLIKEKYSSSRHIAINGASAGGILVGKAMTERPDLFAAAIPQVGLMNPLRGEETPNGPVNVPEFGTVKKPDECKALI AMDPYLSIIDGVRYPAALVTAGINDPRVSAWQPAKFAARLQAATASNKPVLLFTDFKAGHGMGNTKQMEFESLADVLSFG LWQTGHPEFQIR >Mature_731_residues TIPRTALFLLCFLALTSAAFAVEKPEPVVIRKSFPEAQKPVVETWCGETIADPFRAMENIRNPQVINWLKQESDYARNTL QRIPGRDSLISKMQEFDKRKVSKVYNLSITENDVYFYLKQTPSDETGQLYYRKGFHGKETLLFNPSSSPDKESHTVIGTI SPSFDGSKVAFTISKNGSEDAVLLIMDVATKKLFPEKITRCRFASPSWLKTGDAFLYNRLRALEKPGENPQHNSKTFLHI PGTDPSRDLEIFSSATNPELVLNPEDIPEVSYEKESGQLFAFLSNVDRRLTVYYAPLDQPGKKKTAWKKLFIPKDDVHDF AVTEKDIYFSSPKKASGFRLLKTSLEHPDLEHAELIVPETPGATLTGFTLTSRGIFYTQSKNGVEEKLYHQEYGKTESKE IILPSAAGTIALSSKGFRYPDLWVVIAGWSKDYRRYRYDSRNEGTFSLETLSSPALYPEYERLKVEELMIPSHDGVMVPL SIVYRNDLDKKGTNPVLLYGYGAYGNALTPFFSPSLLLWTHKGGILAIVHARGGGELGDAWHTSGMKTTKPNTWKDLISS AEYLIKEKYSSSRHIAINGASAGGILVGKAMTERPDLFAAAIPQVGLMNPLRGEETPNGPVNVPEFGTVKKPDECKALIA MDPYLSIIDGVRYPAALVTAGINDPRVSAWQPAKFAARLQAATASNKPVLLFTDFKAGHGMGNTKQMEFESLADVLSFGL WQTGHPEFQIR
Specific function: Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond [H]
COG id: COG1505
COG function: function code E; Serine proteases of the peptidase family S9A
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9A family [H]
Homologues:
Organism=Homo sapiens, GI41349456, Length=702, Percent_Identity=25.0712250712251, Blast_Score=230, Evalue=4e-60, Organism=Homo sapiens, GI108860686, Length=226, Percent_Identity=30.0884955752212, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI284172420, Length=226, Percent_Identity=30.0884955752212, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI284172413, Length=226, Percent_Identity=30.0884955752212, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI70778815, Length=226, Percent_Identity=30.0884955752212, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI284172438, Length=226, Percent_Identity=30.0884955752212, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI284172431, Length=226, Percent_Identity=30.0884955752212, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI108860692, Length=216, Percent_Identity=30.0925925925926, Blast_Score=97, Evalue=8e-20, Organism=Escherichia coli, GI1788150, Length=710, Percent_Identity=25.4929577464789, Blast_Score=176, Evalue=4e-45, Organism=Drosophila melanogaster, GI24583414, Length=757, Percent_Identity=25.6274768824306, Blast_Score=201, Evalue=1e-51, Organism=Drosophila melanogaster, GI221510989, Length=269, Percent_Identity=35.3159851301115, Blast_Score=158, Evalue=1e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002471 - InterPro: IPR001375 - InterPro: IPR002470 - InterPro: IPR004106 [H]
Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N [H]
EC number: =3.4.21.26 [H]
Molecular weight: Translated: 81643; Mature: 81512
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIPRTALFLLCFLALTSAAFAVEKPEPVVIRKSFPEAQKPVVETWCGETIADPFRAMEN CCCCHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCHHCCHHHHHCCHHHHHHHHHHHH IRNPQVINWLKQESDYARNTLQRIPGRDSLISKMQEFDKRKVSKVYNLSITENDVYFYLK CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEE QTPSDETGQLYYRKGFHGKETLLFNPSSSPDKESHTVIGTISPSFDGSKVAFTISKNGSE ECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCC DAVLLIMDVATKKLFPEKITRCRFASPSWLKTGDAFLYNRLRALEKPGENPQHNSKTFLH CEEEEEEEHHHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEE IPGTDPSRDLEIFSSATNPELVLNPEDIPEVSYEKESGQLFAFLSNVDRRLTVYYAPLDQ ECCCCCCCCHHHEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC PGKKKTAWKKLFIPKDDVHDFAVTEKDIYFSSPKKASGFRLLKTSLEHPDLEHAELIVPE CCCCCCHHHEECCCCCCCCCCEECCCCEEECCCCCCCCHHHHHHHCCCCCCCCCEEEEEC TPGATLTGFTLTSRGIFYTQSKNGVEEKLYHQEYGKTESKEIILPSAAGTIALSSKGFRY CCCCEEEEEEEECCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCC PDLWVVIAGWSKDYRRYRYDSRNEGTFSLETLSSPALYPEYERLKVEELMIPSHDGVMVP CCEEEEEECCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHEEEEHEECCCCCCEEEE LSIVYRNDLDKKGTNPVLLYGYGAYGNALTPFFSPSLLLWTHKGGILAIVHARGGGELGD EEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCC AWHTSGMKTTKPNTWKDLISSAEYLIKEKYSSSRHIAINGASAGGILVGKAMTERPDLFA HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHH AAIPQVGLMNPLRGEETPNGPVNVPEFGTVKKPDECKALIAMDPYLSIIDGVRYPAALVT HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECHHHHHHHCCCCCHHHEE AGINDPRVSAWQPAKFAARLQAATASNKPVLLFTDFKAGHGMGNTKQMEFESLADVLSFG ECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHC LWQTGHPEFQIR CCCCCCCCEEEC >Mature Secondary Structure TIPRTALFLLCFLALTSAAFAVEKPEPVVIRKSFPEAQKPVVETWCGETIADPFRAMEN CCCHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCHHCCHHHHHCCHHHHHHHHHHHH IRNPQVINWLKQESDYARNTLQRIPGRDSLISKMQEFDKRKVSKVYNLSITENDVYFYLK CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEE QTPSDETGQLYYRKGFHGKETLLFNPSSSPDKESHTVIGTISPSFDGSKVAFTISKNGSE ECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCC DAVLLIMDVATKKLFPEKITRCRFASPSWLKTGDAFLYNRLRALEKPGENPQHNSKTFLH CEEEEEEEHHHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEE IPGTDPSRDLEIFSSATNPELVLNPEDIPEVSYEKESGQLFAFLSNVDRRLTVYYAPLDQ ECCCCCCCCHHHEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC PGKKKTAWKKLFIPKDDVHDFAVTEKDIYFSSPKKASGFRLLKTSLEHPDLEHAELIVPE CCCCCCHHHEECCCCCCCCCCEECCCCEEECCCCCCCCHHHHHHHCCCCCCCCCEEEEEC TPGATLTGFTLTSRGIFYTQSKNGVEEKLYHQEYGKTESKEIILPSAAGTIALSSKGFRY CCCCEEEEEEEECCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCC PDLWVVIAGWSKDYRRYRYDSRNEGTFSLETLSSPALYPEYERLKVEELMIPSHDGVMVP CCEEEEEECCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHEEEEHEECCCCCCEEEE LSIVYRNDLDKKGTNPVLLYGYGAYGNALTPFFSPSLLLWTHKGGILAIVHARGGGELGD EEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCC AWHTSGMKTTKPNTWKDLISSAEYLIKEKYSSSRHIAINGASAGGILVGKAMTERPDLFA HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHH AAIPQVGLMNPLRGEETPNGPVNVPEFGTVKKPDECKALIAMDPYLSIIDGVRYPAALVT HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECHHHHHHHCCCCCHHHEE AGINDPRVSAWQPAKFAARLQAATASNKPVLLFTDFKAGHGMGNTKQMEFESLADVLSFG ECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHC LWQTGHPEFQIR CCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1840588; 7764331 [H]