| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is hsdR [H]
Identifier: 119356724
GI number: 119356724
Start: 1022290
End: 1024827
Strand: Reverse
Name: hsdR [H]
Synonym: Cpha266_0896
Alternate gene names: 119356724
Gene position: 1024827-1022290 (Counterclockwise)
Preceding gene: 119356733
Following gene: 119356723
Centisome position: 32.7
GC content: 47.68
Gene sequence:
>2538_bases ATGGTGCATAAGGAAGCCGCCGCCCGCATTAAAATCAACAAGCTGCTTGAAGCTTCCGGTTGGCGGTTCTTTGCTGAAGG GAATCAACGGGCCAACATTCAGCTTGAGCCAAAAGTTACGATAACAACGCAGGACATTGACATTCTCGGCGAGAACTTCG AAAAAGTCACCAGAGGATTTATTGACTTTCTTCTTCTCAACGACAAAGGCTTTCCCTTCATCGTCCTTGAAGCGAAATCG GAAGAGAAAAATCCGCTTGCAGGCAAAGAACAATCGAGGAAATACGCACGCTCGCAGAACTGCCGGTTTGTCATTCTCTC GAATGGCAACATGCACTATTTCTGGGATCTTGAGCGGGGAAATCCCTACATCATCACATCCTTTCCAACTCCGGACTCAG TCATCGGCTATCAGAAAGTATCGAGTGACCCTCAGTGCATCATTGACGAGCAGGTTGGAGATGATTATATCGCTCTGACA CAGCGCCCGAACTATTTCGCAGAGGCGGCATGGAAGAATGAAGAAGAACGTTCCGATTACATTCAATCGAACAAGCTCAG GTTCCTGCGACCCTACCAGTTGAAAGCCATTGTTGCCCTGCAGAAGGCTGTCAAGGATGGACAGGATCGTTTTCTTTTTG AAATGGCTACAGGCACAGGCAAAACACTTGTTGCTGCAGCAGTGATCAAGCTCTTTCTGAAAACCAGCAACTCCCGCCGT GTTCTTTTTCTTGTTGATCGCCTCGAACTTGAAGATCAAGCGAAGAAATCTTTTGCAGCCGCGCTTGCCAACGATTATAA AACCGTTGTCTACAAAGAGAATCGTGACGATTGGCGTAGAGCGGAAATAGTTGTTACCACCGTTCAGTCACTGCTTTTCA ACAACAAATACCAGAGGCTCTTTTCGCCAACAGATTTCGACCTTGTCATCTCCGACGAAGCCCATCGCTCCATTGGCGGA AATGCACGTGCCGTTTTCGATTACTTTATCGGTTACAAGCTTGGGTTGACTGCAACACCGCGAGACTACCTCAAGAAATT TGACACAACCAGCAACGCATCAAAAGATCCGCGCGAGCTTGAACGCCGGATGCTGCTCGACACCTATCGAACCTTTGGAT GCGACAACGGTCAACCAACCTTCCGTTACTCATTGCTTGACGGAGTAAAAGAGGGCTATCTCATCAACCCTACGGTGGTT GATGCAAGAACAGGCATTACTACGGAGCTTCTTTCGGACAAAGGATTCATTGTTACCATTACCGACAACGAAGGAGAAAA TCAGGAAGAGGCATACAAAATCCGGGAGTTTGAAAAACGCTTCTTTTCTGACGCCACAAACACACTGTTTTGCAAAACCT TTCTTGAATATGCCCTGCGTGATCCGGTCAGTGGCGAGATAGGGAAATCAATCATCTTTGCAGTCAGTCAGAACCATGCA GCCCGCCTCACCCAGGTGCTCAACCTGATTGCCGACAGAATGTTCCCCGGCAGATACCAGTCAGACTTTGCTGTGCAGGT AACGTCACAAATCCCAGACGCCCAGCAGTTTACCATCAACTTTACCAACAACAACCTGCTTGGTTCCGGTAACTTCATGG ATACCTATCGGACAAGCAAGGCCCGTGTCTGCGTTACTGTCGGTATGATGACCACCGGTTACGACTGCCCTGATATTCTC AACCTTGGTCTGTTTCGGCCCATCTTCTCGCCGACAGACTTCATCCAAATAAAAGGTCGCGGCACCAGAAAGCATCTTTT TCTTGATCAGCTTTTTGATGATAACGTGAGCAGCAGTGTTCGGCATCCACAAAAGAGCGCCTACATGCTCTTCGATTTCT TTGCCAATTGCGAATACTTCGAAGAGAAATTCAAATACGACAAGAAGATCAAGCTTCCCGAACAGCGGTCCAAAGGCGGG GATGAACCTGATACGGGAACCGGTGCCATACCTGAAATCTATGAACACCTTGGTGAAGATATTCTCGCTTCTGTAAAGGA AGAGACAATCGGCGCTGAGGGGATGAAAATCGACAGGATGTTTTTCGAGCGCTTTGAAGATGTCATTCTCGAAAACGACT TTATCGCCGCAAGCGTTGAAGCCGGCCAGTGGGACAGGGTTATTGATTATGTCAACCATGAAGTGTTCGATAAACCTCAC GAGTACTATACCCTTGACAAACTCCGAAAAGCCGCAGCCGTTGACCGTCGATTGTCACTCCGCGAAATCCTTGAAAAAAT CTTTGGTTTGATTCCGCGATTCAAATCAAAAGACGAGCTGCTCGAAGAGGAGTTCAGCAAATTCGTTGCCGATTACAAGC CCGAAGAGGCGGAAGCAATCCCTGCCATGAAGCACTATTTCAAGGCCTATGTTACCAACGACAAGGTTCGCCACATCATC AACACAAAACATTTCACCGAACTGGCAACCAATCCTGTATTTTCAACCCGTGACCTGAGAGCTGTCCCCGACAAATACCG CGTCATTATTCCCGAATACATAAAAGACTACGTCTCGCTCAATCAATTTGCAGCCTAA
Upstream 100 bases:
>100_bases ATATTGTTGACACTCAGTGGAAAAGGGGTAAACGGAAAAAAAGATACGTATATTTAAAGGTTTTATGTCCGATCCAAAAT AGCGCTAACCATTGACCGTT
Downstream 100 bases:
>100_bases CAGAAGTACCGTAAAATGCTCGACACCGCCACCAAACGACGAATAGATTCCGCTCGCGACATCCTTGTAGGGAAGGTTCC TGACCCGAAATCACAGGTCG
Product: type III restriction enzyme, res subunit
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MVHKEAAARIKINKLLEASGWRFFAEGNQRANIQLEPKVTITTQDIDILGENFEKVTRGFIDFLLLNDKGFPFIVLEAKS EEKNPLAGKEQSRKYARSQNCRFVILSNGNMHYFWDLERGNPYIITSFPTPDSVIGYQKVSSDPQCIIDEQVGDDYIALT QRPNYFAEAAWKNEEERSDYIQSNKLRFLRPYQLKAIVALQKAVKDGQDRFLFEMATGTGKTLVAAAVIKLFLKTSNSRR VLFLVDRLELEDQAKKSFAAALANDYKTVVYKENRDDWRRAEIVVTTVQSLLFNNKYQRLFSPTDFDLVISDEAHRSIGG NARAVFDYFIGYKLGLTATPRDYLKKFDTTSNASKDPRELERRMLLDTYRTFGCDNGQPTFRYSLLDGVKEGYLINPTVV DARTGITTELLSDKGFIVTITDNEGENQEEAYKIREFEKRFFSDATNTLFCKTFLEYALRDPVSGEIGKSIIFAVSQNHA ARLTQVLNLIADRMFPGRYQSDFAVQVTSQIPDAQQFTINFTNNNLLGSGNFMDTYRTSKARVCVTVGMMTTGYDCPDIL NLGLFRPIFSPTDFIQIKGRGTRKHLFLDQLFDDNVSSSVRHPQKSAYMLFDFFANCEYFEEKFKYDKKIKLPEQRSKGG DEPDTGTGAIPEIYEHLGEDILASVKEETIGAEGMKIDRMFFERFEDVILENDFIAASVEAGQWDRVIDYVNHEVFDKPH EYYTLDKLRKAAAVDRRLSLREILEKIFGLIPRFKSKDELLEEEFSKFVADYKPEEAEAIPAMKHYFKAYVTNDKVRHII NTKHFTELATNPVFSTRDLRAVPDKYRVIIPEYIKDYVSLNQFAA
Sequences:
>Translated_845_residues MVHKEAAARIKINKLLEASGWRFFAEGNQRANIQLEPKVTITTQDIDILGENFEKVTRGFIDFLLLNDKGFPFIVLEAKS EEKNPLAGKEQSRKYARSQNCRFVILSNGNMHYFWDLERGNPYIITSFPTPDSVIGYQKVSSDPQCIIDEQVGDDYIALT QRPNYFAEAAWKNEEERSDYIQSNKLRFLRPYQLKAIVALQKAVKDGQDRFLFEMATGTGKTLVAAAVIKLFLKTSNSRR VLFLVDRLELEDQAKKSFAAALANDYKTVVYKENRDDWRRAEIVVTTVQSLLFNNKYQRLFSPTDFDLVISDEAHRSIGG NARAVFDYFIGYKLGLTATPRDYLKKFDTTSNASKDPRELERRMLLDTYRTFGCDNGQPTFRYSLLDGVKEGYLINPTVV DARTGITTELLSDKGFIVTITDNEGENQEEAYKIREFEKRFFSDATNTLFCKTFLEYALRDPVSGEIGKSIIFAVSQNHA ARLTQVLNLIADRMFPGRYQSDFAVQVTSQIPDAQQFTINFTNNNLLGSGNFMDTYRTSKARVCVTVGMMTTGYDCPDIL NLGLFRPIFSPTDFIQIKGRGTRKHLFLDQLFDDNVSSSVRHPQKSAYMLFDFFANCEYFEEKFKYDKKIKLPEQRSKGG DEPDTGTGAIPEIYEHLGEDILASVKEETIGAEGMKIDRMFFERFEDVILENDFIAASVEAGQWDRVIDYVNHEVFDKPH EYYTLDKLRKAAAVDRRLSLREILEKIFGLIPRFKSKDELLEEEFSKFVADYKPEEAEAIPAMKHYFKAYVTNDKVRHII NTKHFTELATNPVFSTRDLRAVPDKYRVIIPEYIKDYVSLNQFAA >Mature_845_residues MVHKEAAARIKINKLLEASGWRFFAEGNQRANIQLEPKVTITTQDIDILGENFEKVTRGFIDFLLLNDKGFPFIVLEAKS EEKNPLAGKEQSRKYARSQNCRFVILSNGNMHYFWDLERGNPYIITSFPTPDSVIGYQKVSSDPQCIIDEQVGDDYIALT QRPNYFAEAAWKNEEERSDYIQSNKLRFLRPYQLKAIVALQKAVKDGQDRFLFEMATGTGKTLVAAAVIKLFLKTSNSRR VLFLVDRLELEDQAKKSFAAALANDYKTVVYKENRDDWRRAEIVVTTVQSLLFNNKYQRLFSPTDFDLVISDEAHRSIGG NARAVFDYFIGYKLGLTATPRDYLKKFDTTSNASKDPRELERRMLLDTYRTFGCDNGQPTFRYSLLDGVKEGYLINPTVV DARTGITTELLSDKGFIVTITDNEGENQEEAYKIREFEKRFFSDATNTLFCKTFLEYALRDPVSGEIGKSIIFAVSQNHA ARLTQVLNLIADRMFPGRYQSDFAVQVTSQIPDAQQFTINFTNNNLLGSGNFMDTYRTSKARVCVTVGMMTTGYDCPDIL NLGLFRPIFSPTDFIQIKGRGTRKHLFLDQLFDDNVSSSVRHPQKSAYMLFDFFANCEYFEEKFKYDKKIKLPEQRSKGG DEPDTGTGAIPEIYEHLGEDILASVKEETIGAEGMKIDRMFFERFEDVILENDFIAASVEAGQWDRVIDYVNHEVFDKPH EYYTLDKLRKAAAVDRRLSLREILEKIFGLIPRFKSKDELLEEEFSKFVADYKPEEAEAIPAMKHYFKAYVTNDKVRHII NTKHFTELATNPVFSTRDLRAVPDKYRVIIPEYIKDYVSLNQFAA
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=436, Percent_Identity=26.605504587156, Blast_Score=119, Evalue=6e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 97123; Mature: 97123
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVHKEAAARIKINKLLEASGWRFFAEGNQRANIQLEPKVTITTQDIDILGENFEKVTRGF CCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCEEEEEECCHHHHCCCHHHHHHHH IDFLLLNDKGFPFIVLEAKSEEKNPLAGKEQSRKYARSQNCRFVILSNGNMHYFWDLERG HHEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEEEEEECC NPYIITSFPTPDSVIGYQKVSSDPQCIIDEQVGDDYIALTQRPNYFAEAAWKNEEERSDY CCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCEEEEECCCCHHHHHHCCCCHHHHHH IQSNKLRFLRPYQLKAIVALQKAVKDGQDRFLFEMATGTGKTLVAAAVIKLFLKTSNSRR HHCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCE VLFLVDRLELEDQAKKSFAAALANDYKTVVYKENRDDWRRAEIVVTTVQSLLFNNKYQRL EEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHH FSPTDFDLVISDEAHRSIGGNARAVFDYFIGYKLGLTATPRDYLKKFDTTSNASKDPREL CCCCCCEEEECCCHHHCCCCCHHHHHHHHHHHEECCCCCCHHHHHHCCCCCCCCCCHHHH ERRMLLDTYRTFGCDNGQPTFRYSLLDGVKEGYLINPTVVDARTGITTELLSDKGFIVTI HHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCEEECCEEEECCCCCHHHHHCCCCEEEEE TDNEGENQEEAYKIREFEKRFFSDATNTLFCKTFLEYALRDPVSGEIGKSIIFAVSQNHA ECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHH ARLTQVLNLIADRMFPGRYQSDFAVQVTSQIPDAQQFTINFTNNNLLGSGNFMDTYRTSK HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCEEECCCCCHHHCCCC ARVCVTVGMMTTGYDCPDILNLGLFRPIFSPTDFIQIKGRGTRKHLFLDQLFDDNVSSSV CEEEEEEEEHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHH RHPQKSAYMLFDFFANCEYFEEKFKYDKKIKLPEQRSKGGDEPDTGTGAIPEIYEHLGED CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHH ILASVKEETIGAEGMKIDRMFFERFEDVILENDFIAASVEAGQWDRVIDYVNHEVFDKPH HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCC EYYTLDKLRKAAAVDRRLSLREILEKIFGLIPRFKSKDELLEEEFSKFVADYKPEEAEAI HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH PAMKHYFKAYVTNDKVRHIINTKHFTELATNPVFSTRDLRAVPDKYRVIIPEYIKDYVSL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEECHHHHHHHHHH NQFAA HHHCC >Mature Secondary Structure MVHKEAAARIKINKLLEASGWRFFAEGNQRANIQLEPKVTITTQDIDILGENFEKVTRGF CCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCEEEEEECCHHHHCCCHHHHHHHH IDFLLLNDKGFPFIVLEAKSEEKNPLAGKEQSRKYARSQNCRFVILSNGNMHYFWDLERG HHEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEEEEEECC NPYIITSFPTPDSVIGYQKVSSDPQCIIDEQVGDDYIALTQRPNYFAEAAWKNEEERSDY CCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCEEEEECCCCHHHHHHCCCCHHHHHH IQSNKLRFLRPYQLKAIVALQKAVKDGQDRFLFEMATGTGKTLVAAAVIKLFLKTSNSRR HHCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCE VLFLVDRLELEDQAKKSFAAALANDYKTVVYKENRDDWRRAEIVVTTVQSLLFNNKYQRL EEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHH FSPTDFDLVISDEAHRSIGGNARAVFDYFIGYKLGLTATPRDYLKKFDTTSNASKDPREL CCCCCCEEEECCCHHHCCCCCHHHHHHHHHHHEECCCCCCHHHHHHCCCCCCCCCCHHHH ERRMLLDTYRTFGCDNGQPTFRYSLLDGVKEGYLINPTVVDARTGITTELLSDKGFIVTI HHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCEEECCEEEECCCCCHHHHHCCCCEEEEE TDNEGENQEEAYKIREFEKRFFSDATNTLFCKTFLEYALRDPVSGEIGKSIIFAVSQNHA ECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHH ARLTQVLNLIADRMFPGRYQSDFAVQVTSQIPDAQQFTINFTNNNLLGSGNFMDTYRTSK HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCEEECCCCCHHHCCCC ARVCVTVGMMTTGYDCPDILNLGLFRPIFSPTDFIQIKGRGTRKHLFLDQLFDDNVSSSV CEEEEEEEEHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHH RHPQKSAYMLFDFFANCEYFEEKFKYDKKIKLPEQRSKGGDEPDTGTGAIPEIYEHLGED CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHH ILASVKEETIGAEGMKIDRMFFERFEDVILENDFIAASVEAGQWDRVIDYVNHEVFDKPH HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCC EYYTLDKLRKAAAVDRRLSLREILEKIFGLIPRFKSKDELLEEEFSKFVADYKPEEAEAI HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH PAMKHYFKAYVTNDKVRHIINTKHFTELATNPVFSTRDLRAVPDKYRVIIPEYIKDYVSL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEECHHHHHHHHHH NQFAA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]