| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is hsdM [H]
Identifier: 119356723
GI number: 119356723
Start: 1019770
End: 1022274
Strand: Reverse
Name: hsdM [H]
Synonym: Cpha266_0895
Alternate gene names: 119356723
Gene position: 1022274-1019770 (Counterclockwise)
Preceding gene: 119356724
Following gene: 119356722
Centisome position: 32.62
GC content: 47.94
Gene sequence:
>2505_bases ATGCTCGACACCGCCACCAAACGACGAATAGATTCCGCTCGCGACATCCTTGTAGGGAAGGTTCCTGACCCGAAATCACA GGTCGAACAGATTACCATTGCCCTCATCTACAAGTTCATGGATGATATGGACGCCGAAAGCGAAGAGCTTGGTGGCGTAA GAACCTTCTTTACCAAAGAGTTTGCCCGTTACGGCTGGGCTAAACTCATGCGTTCCGGCCTCGGTGGTCATGAAACCCTG AACCTCTATGCAGAAGCGATATCGTCAATGCCCGAAAACCCCGGTATTCCGGCACTCTTTCGTTCAATATTCAAGAATGC CTACCTCCCGTATCGTGATCCGGAAACCCTGAAAAGTTTTCTGAAAATCATCGATGAGTTCGAGTACGATCACTCCGAAC GGCTGGGAGATGCCTTCGAATACCTGCTCTCGGTGCTTGGTTCCCAGGGTGATGCCGGTCAGTTCCGCACCCCTCGTCAT ATCATTGACTTCATGGTCGCGGTTCTTGATCCAAAAAAAGAGGAAAAAATACTTGACCCTGCCTGCGGCACAGCGGGATT TCTGATTTCGGCATACAAACATATTCTGCGAGCAAACACCGATGCCGACGGCAACAGCTTGTTGACTCCTGACGACAAAG GCCGCCTTGCCCAGAACATCAATGGATACGATATCTCCCCTGACATGGTTCGTTTGTCTCTGGTGAATCTCTATCTGCAT GGTTTTGCTGATCCGCATATTGACGAGTACGACACCCTGACCTCCCTCGACAAGTGGAACGAACATGCTGATGTGATCCT TGCCAATCCGCCCTTCATGTCGCCAAAAGGAGGTATCAAGCCGCACAAGCGCTTTTCCATTCAGGCAACCCGCAGTGAAG TGCTCTTTGTCGATTACATGGCAGAACACCTGAAACCCAACGGACGGGCAGGCATCATTGTGCCTGAAGGGATCATCTTT CAGAGCGGAACCGCGTACAAGTCGCTCAGAAAAATGCTGGTTGACACCGGACTGGTTGCAGTAATCTCCCTGCCAGCAGG AGTCTTCCAGCCCTACTCCGGCGTCAAGACATCTATTATCATTCTCGATAAATCCATTGCCAAGCGAAGCAACACCATCG CATTTTTCAAGGTGGATAACGACGGTTTTGGTCTTGGTGCTCAACGTCGCGTAATAGTCAAGAACGATCTGCCAACCGTC GCGACTGAAATCGCAGAATATCTCGGTAGGCTGAGACGCCATGAATCAGTTGAAGATCTCCAGTTGTCACAGGGATTGAT TGTGCCAAAGGAGAAGATCGCCGAAAATGGGGATTATAATTTGAGTGGGGAGAGGTATCGGGAGAATATCGCCAGCAACC ACTCTTTTCCGTTGGTATATCTTGGTAACGCTGAGTTATTTCGAGTTGAGAGCGGAGGTACTCCAAAATCAGATGTTGAA GAGTTATGGAATGGTGGTTTTCCATGGGCAACGCTTGCGGATCTGCCTTCAACAGATTTTATCACTGAAATCAGATCAAC CAGAAGAACCATCAGTGAAAGGGGATTACGAGAATCTTCAGCAAAAATGATTCCGGAAAACTCAGTCATCGTATCCACCC GAGCAACAATAGGTCGTATAGCCATCAATCGTATCCCGATGGCAACAAACCAAGGTTTCAAGAATGTTATAATCGAAGAC AAGTCGAAGGTTATTTCGGAATACGTTGCGCTCGCGCTTACAAAGCTTGTTCCGACAATGAACGCTTGGGCAACTGGAGG AACATTCAAGGAGATTCCTAAATCAAGATTTTGCGAACTTGAAATTCCCCTGCCGCCGCTGGAGGTGCAGAAAAAGATCG TTGCAAAGATTGAAGGCTATCAGAAAGTCATTGACGGTGCCCGCGCCGTCCTCGACAACTACCGCCCTCATATCCCGATA AATCCGGACTGGCCGATAGTGAAACTGGAGACTGTCAGTACGATCGTTCGTGGTAGTTCACCTCGTCCCCAAGGTGATCC AAAATACTTCGGTGGTCCAGTGCCTCGTCTGATGGTTGCAGATATTACTCGTGACGGTATGTATACTACGCCTCTAATTG ATTCACTGACTGAACTAGGCGCCGGAAAAAGTCGTTTTATGAAATCGGGTGAAGTAATTATTACGGTTAGCGGAAATCCA GGTCTTCCTACAATTTTAGCTGTTGATGCTTGTATTCATGACGGATTCGTCGGGCTTCGTGAACTAAGCAATGACGTAGT TCCTGAATACCTTTACTTTTCATTATTGGCGCTTCATAGTCAGCATGGATCTCAGTCAGTTGGTGCGGTTTTTAAAAATC TCACTTCGGATCAAATTCGTGAGTTTACAATATCATTACCTCCTCTTGCAACCCAGCAGGCTATCGTTGCCGAAATTGAA GCAGAACAAGCATTGGTAAATGCCAACAGTGAACTGATCGAACGCTTCGAGAATAAGATTCAGGCTACCATCACCCGCGT CTGGGTAAGAGATGGTGCTTTATGA
Upstream 100 bases:
>100_bases CCTGAGAGCTGTCCCCGACAAATACCGCGTCATTATTCCCGAATACATAAAAGACTACGTCTCGCTCAATCAATTTGCAG CCTAACAGAAGTACCGTAAA
Downstream 100 bases:
>100_bases AGTTTGAAGAGTTCGATCGGTATTCGGAAAATATGCTGATGGCTCAGTATGATATTTCCGAAATCATTACCCACGAATTG ATGAAGGGTGAGATTCGTGA
Product: N-6 DNA methylase
Products: NA
Alternate protein names: M.EcoEI [H]
Number of amino acids: Translated: 834; Mature: 834
Protein sequence:
>834_residues MLDTATKRRIDSARDILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGVRTFFTKEFARYGWAKLMRSGLGGHETL NLYAEAISSMPENPGIPALFRSIFKNAYLPYRDPETLKSFLKIIDEFEYDHSERLGDAFEYLLSVLGSQGDAGQFRTPRH IIDFMVAVLDPKKEEKILDPACGTAGFLISAYKHILRANTDADGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLH GFADPHIDEYDTLTSLDKWNEHADVILANPPFMSPKGGIKPHKRFSIQATRSEVLFVDYMAEHLKPNGRAGIIVPEGIIF QSGTAYKSLRKMLVDTGLVAVISLPAGVFQPYSGVKTSIIILDKSIAKRSNTIAFFKVDNDGFGLGAQRRVIVKNDLPTV ATEIAEYLGRLRRHESVEDLQLSQGLIVPKEKIAENGDYNLSGERYRENIASNHSFPLVYLGNAELFRVESGGTPKSDVE ELWNGGFPWATLADLPSTDFITEIRSTRRTISERGLRESSAKMIPENSVIVSTRATIGRIAINRIPMATNQGFKNVIIED KSKVISEYVALALTKLVPTMNAWATGGTFKEIPKSRFCELEIPLPPLEVQKKIVAKIEGYQKVIDGARAVLDNYRPHIPI NPDWPIVKLETVSTIVRGSSPRPQGDPKYFGGPVPRLMVADITRDGMYTTPLIDSLTELGAGKSRFMKSGEVIITVSGNP GLPTILAVDACIHDGFVGLRELSNDVVPEYLYFSLLALHSQHGSQSVGAVFKNLTSDQIREFTISLPPLATQQAIVAEIE AEQALVNANSELIERFENKIQATITRVWVRDGAL
Sequences:
>Translated_834_residues MLDTATKRRIDSARDILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGVRTFFTKEFARYGWAKLMRSGLGGHETL NLYAEAISSMPENPGIPALFRSIFKNAYLPYRDPETLKSFLKIIDEFEYDHSERLGDAFEYLLSVLGSQGDAGQFRTPRH IIDFMVAVLDPKKEEKILDPACGTAGFLISAYKHILRANTDADGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLH GFADPHIDEYDTLTSLDKWNEHADVILANPPFMSPKGGIKPHKRFSIQATRSEVLFVDYMAEHLKPNGRAGIIVPEGIIF QSGTAYKSLRKMLVDTGLVAVISLPAGVFQPYSGVKTSIIILDKSIAKRSNTIAFFKVDNDGFGLGAQRRVIVKNDLPTV ATEIAEYLGRLRRHESVEDLQLSQGLIVPKEKIAENGDYNLSGERYRENIASNHSFPLVYLGNAELFRVESGGTPKSDVE ELWNGGFPWATLADLPSTDFITEIRSTRRTISERGLRESSAKMIPENSVIVSTRATIGRIAINRIPMATNQGFKNVIIED KSKVISEYVALALTKLVPTMNAWATGGTFKEIPKSRFCELEIPLPPLEVQKKIVAKIEGYQKVIDGARAVLDNYRPHIPI NPDWPIVKLETVSTIVRGSSPRPQGDPKYFGGPVPRLMVADITRDGMYTTPLIDSLTELGAGKSRFMKSGEVIITVSGNP GLPTILAVDACIHDGFVGLRELSNDVVPEYLYFSLLALHSQHGSQSVGAVFKNLTSDQIREFTISLPPLATQQAIVAEIE AEQALVNANSELIERFENKIQATITRVWVRDGAL >Mature_834_residues MLDTATKRRIDSARDILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGVRTFFTKEFARYGWAKLMRSGLGGHETL NLYAEAISSMPENPGIPALFRSIFKNAYLPYRDPETLKSFLKIIDEFEYDHSERLGDAFEYLLSVLGSQGDAGQFRTPRH IIDFMVAVLDPKKEEKILDPACGTAGFLISAYKHILRANTDADGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLH GFADPHIDEYDTLTSLDKWNEHADVILANPPFMSPKGGIKPHKRFSIQATRSEVLFVDYMAEHLKPNGRAGIIVPEGIIF QSGTAYKSLRKMLVDTGLVAVISLPAGVFQPYSGVKTSIIILDKSIAKRSNTIAFFKVDNDGFGLGAQRRVIVKNDLPTV ATEIAEYLGRLRRHESVEDLQLSQGLIVPKEKIAENGDYNLSGERYRENIASNHSFPLVYLGNAELFRVESGGTPKSDVE ELWNGGFPWATLADLPSTDFITEIRSTRRTISERGLRESSAKMIPENSVIVSTRATIGRIAINRIPMATNQGFKNVIIED KSKVISEYVALALTKLVPTMNAWATGGTFKEIPKSRFCELEIPLPPLEVQKKIVAKIEGYQKVIDGARAVLDNYRPHIPI NPDWPIVKLETVSTIVRGSSPRPQGDPKYFGGPVPRLMVADITRDGMYTTPLIDSLTELGAGKSRFMKSGEVIITVSGNP GLPTILAVDACIHDGFVGLRELSNDVVPEYLYFSLLALHSQHGSQSVGAVFKNLTSDQIREFTISLPPLATQQAIVAEIE AEQALVNANSELIERFENKIQATITRVWVRDGAL
Specific function: The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=310, Percent_Identity=26.7741935483871, Blast_Score=116, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 92371; Mature: 92371
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDTATKRRIDSARDILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGVRTFFTKE CCCCHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHH FARYGWAKLMRSGLGGHETLNLYAEAISSMPENPGIPALFRSIFKNAYLPYRDPETLKSF HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH LKIIDEFEYDHSERLGDAFEYLLSVLGSQGDAGQFRTPRHIIDFMVAVLDPKKEEKILDP HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCC ACGTAGFLISAYKHILRANTDADGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLH CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH GFADPHIDEYDTLTSLDKWNEHADVILANPPFMSPKGGIKPHKRFSIQATRSEVLFVDYM CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCEEHHHHH AEHLKPNGRAGIIVPEGIIFQSGTAYKSLRKMLVDTGLVAVISLPAGVFQPYSGVKTSII HHHCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCCCCEEEE ILDKSIAKRSNTIAFFKVDNDGFGLGAQRRVIVKNDLPTVATEIAEYLGRLRRHESVEDL EEEHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHH QLSQGLIVPKEKIAENGDYNLSGERYRENIASNHSFPLVYLGNAELFRVESGGTPKSDVE HHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHH ELWNGGFPWATLADLPSTDFITEIRSTRRTISERGLRESSAKMIPENSVIVSTRATIGRI HHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECHHHHHH AINRIPMATNQGFKNVIIEDKSKVISEYVALALTKLVPTMNAWATGGTFKEIPKSRFCEL HHHCCCCCCCCCCHHEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEE EIPLPPLEVQKKIVAKIEGYQKVIDGARAVLDNYRPHIPINPDWPIVKLETVSTIVRGSS ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHCCC PRPQGDPKYFGGPVPRLMVADITRDGMYTTPLIDSLTELGAGKSRFMKSGEVIITVSGNP CCCCCCCCCCCCCCCHHHEEHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEEECCCC GLPTILAVDACIHDGFVGLRELSNDVVPEYLYFSLLALHSQHGSQSVGAVFKNLTSDQIR CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH EFTISLPPLATQQAIVAEIEAEQALVNANSELIERFENKIQATITRVWVRDGAL HEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLDTATKRRIDSARDILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGVRTFFTKE CCCCHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHH FARYGWAKLMRSGLGGHETLNLYAEAISSMPENPGIPALFRSIFKNAYLPYRDPETLKSF HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH LKIIDEFEYDHSERLGDAFEYLLSVLGSQGDAGQFRTPRHIIDFMVAVLDPKKEEKILDP HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCC ACGTAGFLISAYKHILRANTDADGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLH CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH GFADPHIDEYDTLTSLDKWNEHADVILANPPFMSPKGGIKPHKRFSIQATRSEVLFVDYM CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCEEHHHHH AEHLKPNGRAGIIVPEGIIFQSGTAYKSLRKMLVDTGLVAVISLPAGVFQPYSGVKTSII HHHCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCCCCEEEE ILDKSIAKRSNTIAFFKVDNDGFGLGAQRRVIVKNDLPTVATEIAEYLGRLRRHESVEDL EEEHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHH QLSQGLIVPKEKIAENGDYNLSGERYRENIASNHSFPLVYLGNAELFRVESGGTPKSDVE HHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHH ELWNGGFPWATLADLPSTDFITEIRSTRRTISERGLRESSAKMIPENSVIVSTRATIGRI HHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECHHHHHH AINRIPMATNQGFKNVIIEDKSKVISEYVALALTKLVPTMNAWATGGTFKEIPKSRFCEL HHHCCCCCCCCCCHHEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEE EIPLPPLEVQKKIVAKIEGYQKVIDGARAVLDNYRPHIPINPDWPIVKLETVSTIVRGSS ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHCCC PRPQGDPKYFGGPVPRLMVADITRDGMYTTPLIDSLTELGAGKSRFMKSGEVIITVSGNP CCCCCCCCCCCCCCCHHHEEHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEEECCCC GLPTILAVDACIHDGFVGLRELSNDVVPEYLYFSLLALHSQHGSQSVGAVFKNLTSDQIR CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH EFTISLPPLATQQAIVAEIEAEQALVNANSELIERFENKIQATITRVWVRDGAL HEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]