| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is dppD [C]
Identifier: 119356707
GI number: 119356707
Start: 1003324
End: 1004340
Strand: Direct
Name: dppD [C]
Synonym: Cpha266_0879
Alternate gene names: 119356707
Gene position: 1003324-1004340 (Clockwise)
Preceding gene: 119356702
Following gene: 119356708
Centisome position: 32.02
GC content: 50.54
Gene sequence:
>1017_bases ATGGAAAAAATTCTTGAACTGAAAGAGCTCAAAACATGGTACTCCACATCGGCCGGGATAGCAAAGGCTGTTGACGGCGT AAGTTTTTCGCTCGACAAAAATCAGACGCTCGGGGTTGTTGGCGAATCAGGGTGCGGAAAATCCGTTACGGCGCTCTCGG TTATGCGGCTTGTTCCCATGCCTCCCGGATATTTTGCCGGGGGAGAGATTCTCTGGAAAGGCAAGAATCTCCTGACCATT CCTGAAGAGGAGATGCGCCGGTTAAGAGGTAATGAGATCTCCATGATTTTTCAGGAACCGATGAGTTCTCTTAATCCGGT GTTTACCTGTGGCGCCCAGATTATGGAACAGATTCTTGTCCATCGTCCCGTAACACAGAGTGAAGCCAAAGCCCGATCGG TTGAGCTGCTTCACCTTGTGGGAATACCGAATCCTCTGGAGCGTTTCTCCTCATACCCCCATGAGCTTTCAGGCGGTATG CGCCAGCGGGTGATGATTGCCATGGCGCTCTCCTGTAATCCCCAGCTCCTTATAGCAGATGAGCCGACAACGGCACTCGA TGTCACGGTTCAGGCCCAGATACTGGATCTTATCGGTACCCTTCAGGCTGATACCGGCATGAGTGTCATGCTGATAACCC ATGACTTCGGAGTTGTCGCCGAGCTTTGTCAGGAGGTTATCGTGATGTATGCGTCAAGGGTCGTTGAGAAAGGTCGCGTC GACCAGATTTTCAGTAACCCCATGCATCCCTATACCCGAGGTCTTTTGAACTCCATTCCGAGACTGGGATCCCGCAATGA ACGACTTCATGTTATTGAGGGAAATGTGCCCAGTGCGATTAATCTGCCTGATGGCTGCCGTTTTGCAGGACGTTGTCCTT TTGCCGAAGCGCAGTGCAGAGAAAAACAACCGCTGCTTGAACTCTGTGAAGCTGGCCATGAAGTTGCATGCTGGAAAGCC ATCGATTCCACCTATGCAGATGAAATAAAAAGCAGACTGATGCAAAACATTATCTGA
Upstream 100 bases:
>100_bases ATATGAAGCTGACAAAACATATTTTCATGCTTGATTCGGGCGATACGGCAAAAGGCTGTTTCATCCATGAAGACAAGCTT TGGAAGGGCAAACGTTATAT
Downstream 100 bases:
>100_bases TTCTCACGTTTTATCGGGCTTGTCTCCCGGATAAAATCTTTAACCATACTTATACTTGATAGTTATGTCAGACCCGCTGC TTCTTGTTGTTGAGGATGAC
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MEKILELKELKTWYSTSAGIAKAVDGVSFSLDKNQTLGVVGESGCGKSVTALSVMRLVPMPPGYFAGGEILWKGKNLLTI PEEEMRRLRGNEISMIFQEPMSSLNPVFTCGAQIMEQILVHRPVTQSEAKARSVELLHLVGIPNPLERFSSYPHELSGGM RQRVMIAMALSCNPQLLIADEPTTALDVTVQAQILDLIGTLQADTGMSVMLITHDFGVVAELCQEVIVMYASRVVEKGRV DQIFSNPMHPYTRGLLNSIPRLGSRNERLHVIEGNVPSAINLPDGCRFAGRCPFAEAQCREKQPLLELCEAGHEVACWKA IDSTYADEIKSRLMQNII
Sequences:
>Translated_338_residues MEKILELKELKTWYSTSAGIAKAVDGVSFSLDKNQTLGVVGESGCGKSVTALSVMRLVPMPPGYFAGGEILWKGKNLLTI PEEEMRRLRGNEISMIFQEPMSSLNPVFTCGAQIMEQILVHRPVTQSEAKARSVELLHLVGIPNPLERFSSYPHELSGGM RQRVMIAMALSCNPQLLIADEPTTALDVTVQAQILDLIGTLQADTGMSVMLITHDFGVVAELCQEVIVMYASRVVEKGRV DQIFSNPMHPYTRGLLNSIPRLGSRNERLHVIEGNVPSAINLPDGCRFAGRCPFAEAQCREKQPLLELCEAGHEVACWKA IDSTYADEIKSRLMQNII >Mature_338_residues MEKILELKELKTWYSTSAGIAKAVDGVSFSLDKNQTLGVVGESGCGKSVTALSVMRLVPMPPGYFAGGEILWKGKNLLTI PEEEMRRLRGNEISMIFQEPMSSLNPVFTCGAQIMEQILVHRPVTQSEAKARSVELLHLVGIPNPLERFSSYPHELSGGM RQRVMIAMALSCNPQLLIADEPTTALDVTVQAQILDLIGTLQADTGMSVMLITHDFGVVAELCQEVIVMYASRVVEKGRV DQIFSNPMHPYTRGLLNSIPRLGSRNERLHVIEGNVPSAINLPDGCRFAGRCPFAEAQCREKQPLLELCEAGHEVACWKA IDSTYADEIKSRLMQNII
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=253, Percent_Identity=25.296442687747, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI255708477, Length=253, Percent_Identity=25.296442687747, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI9961252, Length=241, Percent_Identity=29.045643153527, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4505771, Length=254, Percent_Identity=28.3464566929134, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI9961250, Length=256, Percent_Identity=29.6875, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI42741659, Length=231, Percent_Identity=28.1385281385281, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9955968, Length=231, Percent_Identity=29.8701298701299, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9955966, Length=231, Percent_Identity=29.8701298701299, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI45243524, Length=231, Percent_Identity=29.8701298701299, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI9665248, Length=226, Percent_Identity=29.2035398230088, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI21536378, Length=238, Percent_Identity=27.3109243697479, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1789963, Length=321, Percent_Identity=45.7943925233645, Blast_Score=306, Evalue=8e-85, Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=47.0404984423676, Blast_Score=305, Evalue=3e-84, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=45.2830188679245, Blast_Score=284, Evalue=7e-78, Organism=Escherichia coli, GI145693107, Length=267, Percent_Identity=50.561797752809, Blast_Score=261, Evalue=5e-71, Organism=Escherichia coli, GI1787500, Length=320, Percent_Identity=42.1875, Blast_Score=250, Evalue=1e-67, Organism=Escherichia coli, GI1789962, Length=328, Percent_Identity=40.2439024390244, Blast_Score=244, Evalue=5e-66, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=46.3320463320463, Blast_Score=241, Evalue=6e-65, Organism=Escherichia coli, GI1787758, Length=313, Percent_Identity=36.741214057508, Blast_Score=204, Evalue=9e-54, Organism=Escherichia coli, GI1787548, Length=308, Percent_Identity=36.038961038961, Blast_Score=198, Evalue=4e-52, Organism=Escherichia coli, GI1789890, Length=236, Percent_Identity=39.4067796610169, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=34.3629343629344, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1786398, Length=260, Percent_Identity=34.2307692307692, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1787547, Length=267, Percent_Identity=30.3370786516854, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=34.7417840375587, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789032, Length=244, Percent_Identity=30.7377049180328, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=31.063829787234, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=29.6137339055794, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=30.8370044052863, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788450, Length=235, Percent_Identity=29.3617021276596, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790162, Length=258, Percent_Identity=27.1317829457364, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI87081791, Length=257, Percent_Identity=29.9610894941634, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=31.6455696202532, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789672, Length=259, Percent_Identity=28.1853281853282, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788644, Length=180, Percent_Identity=31.6666666666667, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=31.0502283105023, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1786872, Length=257, Percent_Identity=29.1828793774319, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787370, Length=249, Percent_Identity=27.3092369477912, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787105, Length=249, Percent_Identity=29.718875502008, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1787712, Length=242, Percent_Identity=28.099173553719, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081709, Length=250, Percent_Identity=25.6, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788761, Length=261, Percent_Identity=25.2873563218391, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=30.316742081448, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=24.6861924686192, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787112, Length=236, Percent_Identity=27.5423728813559, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786319, Length=241, Percent_Identity=27.8008298755187, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=27.1604938271605, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI48994943, Length=217, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=27.3542600896861, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790190, Length=218, Percent_Identity=28.4403669724771, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786345, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788165, Length=218, Percent_Identity=27.5229357798165, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786803, Length=211, Percent_Identity=24.1706161137441, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789586, Length=239, Percent_Identity=24.6861924686192, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787164, Length=95, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=25.6281407035176, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=24.5762711864407, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789593, Length=237, Percent_Identity=25.3164556962025, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=243, Percent_Identity=25.9259259259259, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI87082267, Length=291, Percent_Identity=25.085910652921, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI48995001, Length=115, Percent_Identity=35.6521739130435, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17541710, Length=235, Percent_Identity=30.2127659574468, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI193209708, Length=229, Percent_Identity=28.82096069869, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534520, Length=237, Percent_Identity=27.8481012658228, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193208177, Length=234, Percent_Identity=30.3418803418803, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193202349, Length=246, Percent_Identity=24.390243902439, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI212646699, Length=245, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=234, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193211015, Length=234, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17558664, Length=245, Percent_Identity=27.3469387755102, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI71996809, Length=234, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569143, Length=234, Percent_Identity=26.4957264957265, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567265, Length=242, Percent_Identity=23.9669421487603, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25146777, Length=225, Percent_Identity=25.7777777777778, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=277, Percent_Identity=26.7148014440433, Blast_Score=80, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322640, Length=241, Percent_Identity=29.8755186721992, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641565, Length=245, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI17136662, Length=228, Percent_Identity=29.3859649122807, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI85726357, Length=253, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI23397593, Length=224, Percent_Identity=29.0178571428571, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI281363262, Length=258, Percent_Identity=25.968992248062, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24653245, Length=259, Percent_Identity=26.6409266409266, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 37252; Mature: 37252
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKILELKELKTWYSTSAGIAKAVDGVSFSLDKNQTLGVVGESGCGKSVTALSVMRLVPM CCHHHHHHHHHHHHCCCCCHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCC PPGYFAGGEILWKGKNLLTIPEEEMRRLRGNEISMIFQEPMSSLNPVFTCGAQIMEQILV CCCCCCCCEEEECCCCEEECCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH HRPVTQSEAKARSVELLHLVGIPNPLERFSSYPHELSGGMRQRVMIAMALSCNPQLLIAD CCCCCHHHHHHHHHEEEEEECCCCHHHHHCCCCHHHHCHHHHHHHHHHEECCCCEEEEEC EPTTALDVTVQAQILDLIGTLQADTGMSVMLITHDFGVVAELCQEVIVMYASRVVEKGRV CCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCH DQIFSNPMHPYTRGLLNSIPRLGSRNERLHVIEGNVPSAINLPDGCRFAGRCPFAEAQCR HHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH EKQPLLELCEAGHEVACWKAIDSTYADEIKSRLMQNII CCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEKILELKELKTWYSTSAGIAKAVDGVSFSLDKNQTLGVVGESGCGKSVTALSVMRLVPM CCHHHHHHHHHHHHCCCCCHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCC PPGYFAGGEILWKGKNLLTIPEEEMRRLRGNEISMIFQEPMSSLNPVFTCGAQIMEQILV CCCCCCCCEEEECCCCEEECCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH HRPVTQSEAKARSVELLHLVGIPNPLERFSSYPHELSGGMRQRVMIAMALSCNPQLLIAD CCCCCHHHHHHHHHEEEEEECCCCHHHHHCCCCHHHHCHHHHHHHHHHEECCCCEEEEEC EPTTALDVTVQAQILDLIGTLQADTGMSVMLITHDFGVVAELCQEVIVMYASRVVEKGRV CCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCH DQIFSNPMHPYTRGLLNSIPRLGSRNERLHVIEGNVPSAINLPDGCRFAGRCPFAEAQCR HHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH EKQPLLELCEAGHEVACWKAIDSTYADEIKSRLMQNII CCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]