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The map label for this gene is pscD [H]

Identifier: 119356694

GI number: 119356694

Start: 986814

End: 987248

Strand: Reverse

Name: pscD [H]

Synonym: Cpha266_0863

Alternate gene names: 119356694

Gene position: 987248-986814 (Counterclockwise)

Preceding gene: 119356695

Following gene: 119356685

Centisome position: 31.5

GC content: 40.92

Gene sequence:

>435_bases
ATGCAACCTCAGCTCAGCCGGCCGTTTACCAAAGATAATCAGGTAAGAACCAGCAAATCAGGTCCCTGGTCAGGAAATGC
GGCTCATAAAGCAGAAAAATATTTTATTACTGCTGCAAAAAGAGGGAAAAACGATAACCTTCAGCTTGAGATAAGCCCTG
CTTCCGGTCGCAGAAAACTCTCTCCGACTACAGAGATGATTAACAAAATCATTTCCGGTGAAATAGAGCTTTTTGTGCTG
ACAACTCAGCCGGATATAGCTATAAACCTTGCACAAAAAGTTCTCGACAATGAAAATCGATATGTCATCGATTTTGACAA
ACGAGGAGTTAAGTGGACAATGAGAGACATTCCTGTGTTTTATGACTCTCTCCACAGAGAGTTATGTGTCGAGATTGATC
GACGAACCTATACTCTTAACGAATTTTTCAAGTAA

Upstream 100 bases:

>100_bases
TGAATCCCTTTTTTTATTTAATGTTGTTTTACTAACTTGCTATCTGTTGAAGGTACACACTGTAGTGTGCTTATTTGCAA
ATTCTAACCATGTGCAAACA

Downstream 100 bases:

>100_bases
GAAAGGATCGATTAAAAGCTTTTTAAAGAAAATGCCAAGTTGTTTGTAACCTGGCATTTTCTTTAAAGCTTTTGTTTTGC
AAGTTTCGCTTCTGCTGAGG

Product: photosystem P840 reaction center protein PscD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MQPQLSRPFTKDNQVRTSKSGPWSGNAAHKAEKYFITAAKRGKNDNLQLEISPASGRRKLSPTTEMINKIISGEIELFVL
TTQPDIAINLAQKVLDNENRYVIDFDKRGVKWTMRDIPVFYDSLHRELCVEIDRRTYTLNEFFK

Sequences:

>Translated_144_residues
MQPQLSRPFTKDNQVRTSKSGPWSGNAAHKAEKYFITAAKRGKNDNLQLEISPASGRRKLSPTTEMINKIISGEIELFVL
TTQPDIAINLAQKVLDNENRYVIDFDKRGVKWTMRDIPVFYDSLHRELCVEIDRRTYTLNEFFK
>Mature_144_residues
MQPQLSRPFTKDNQVRTSKSGPWSGNAAHKAEKYFITAAKRGKNDNLQLEISPASGRRKLSPTTEMINKIISGEIELFVL
TTQPDIAINLAQKVLDNENRYVIDFDKRGVKWTMRDIPVFYDSLHRELCVEIDRRTYTLNEFFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019608 [H]

Pfam domain/function: PF10657 RC-P840_PscD [H]

EC number: NA

Molecular weight: Translated: 16663; Mature: 16663

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPQLSRPFTKDNQVRTSKSGPWSGNAAHKAEKYFITAAKRGKNDNLQLEISPASGRRKL
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCC
SPTTEMINKIISGEIELFVLTTQPDIAINLAQKVLDNENRYVIDFDKRGVKWTMRDIPVF
CCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEHHCHHH
YDSLHRELCVEIDRRTYTLNEFFK
HHHHHHHHHHHHCCCEEEHHHHCC
>Mature Secondary Structure
MQPQLSRPFTKDNQVRTSKSGPWSGNAAHKAEKYFITAAKRGKNDNLQLEISPASGRRKL
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCC
SPTTEMINKIISGEIELFVLTTQPDIAINLAQKVLDNENRYVIDFDKRGVKWTMRDIPVF
CCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEHHCHHH
YDSLHRELCVEIDRRTYTLNEFFK
HHHHHHHHHHHHCCCEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7626630 [H]