BacMap

Definition	Chlorobium phaeobacteroides DSM 266 chromosome, complete genome.
Accession	NC_008639
Length	3,133,902

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The map label for this gene is ygcW [C]

Identifier: 119356596

GI number: 119356596

Start: 867063

End: 867875

Strand: Reverse

Name: ygcW [C]

Synonym: Cpha266_0764

Alternate gene names: 119356596

Gene position: 867875-867063 (Counterclockwise)

Preceding gene: 119356597

Following gene: 119356595

Centisome position: 27.69

GC content: 48.83

Gene sequence:

>813_bases
ATGAATGAAACTGCCGCATACTACAAAGGAAGGGTCGCCATTGTGACCGGAGGCGCATCGGGCATCGGTCTTGCACTTGG
CGAAACGATGCTGGCGTACGAAGCCAGCCATATCATTCTTGCCGATTTCAATGACCTGAACCTGGCCCGTGAGACCGAAC
GGTTAAATGCTGCTTATCAAGGTAAGGTGCTTGGATGCCATTGCGATGTAACGAAGGAAGAGGATGTCAGAAAAATGATG
CAGAGTGCCGTCGAATTTGGAGGTGGACGTATCGATTTTCTGTTCAACAATGCTGGTGCCGGATTCTTAGGGCCATTTGA
GGAACTGACTAATGAGGACTGGGAAAAGGCGTTTGCGCTCAACTTCTATGGGGCGCTGTATGGTATTCGTTCGGTATTGC
CGATCATGCGCGCTCAGGGAAGCGGACACATTGTCAACATCATATCTGGTATAGCTTTTTTTCCAATGGCAAGCCAGACC
ATGTATTCCGCAACAAAAGCTGCGTTAAACGGACTTACACTGGCACTCCGCTATGAATTATGGGATGATCAGATCCGTGT
AACCTCTGCTACGCCAGGTACGACGATAACCGCAATCTGGAAAGACATAACCCCGCCTGCGGAAGCGCAGTCAGCAGAAC
AATCCGCTACGAGAATTCTTGCTGGTGTGGCAAAAAATGAACGCATTGTGCTTGGTGACGACGCTGATTTAAACGGCATA
AAAAAATGTTTTGACCCGGATGCTGCCGAGTATTACGATGCGCATCTCTTGAGCGTAGCTCGTAAACGAAAAAGTGGCGA
ATGGGTGTTTTAA

Upstream 100 bases:

>100_bases
ATGCATCACATGGAGGAAGAATTCTTGATGCCACCCAGGATGCCTATGGTAAGGCTTTTGTGTTTAACCCGTAATCACAC
CATAAAACAAGGAGTCAATC

Downstream 100 bases:

>100_bases
CTCGGAAATTAAAACACAATCCAGGGAGAATAACCATGAAAAACGGAAGCTATTTTATACCGCGTGAACAGATCTACCCC
TTCATGAATCCGGGTGCCAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MNETAAYYKGRVAIVTGGASGIGLALGETMLAYEASHIILADFNDLNLARETERLNAAYQGKVLGCHCDVTKEEDVRKMM
QSAVEFGGGRIDFLFNNAGAGFLGPFEELTNEDWEKAFALNFYGALYGIRSVLPIMRAQGSGHIVNIISGIAFFPMASQT
MYSATKAALNGLTLALRYELWDDQIRVTSATPGTTITAIWKDITPPAEAQSAEQSATRILAGVAKNERIVLGDDADLNGI
KKCFDPDAAEYYDAHLLSVARKRKSGEWVF

Sequences:

>Translated_270_residues
MNETAAYYKGRVAIVTGGASGIGLALGETMLAYEASHIILADFNDLNLARETERLNAAYQGKVLGCHCDVTKEEDVRKMM
QSAVEFGGGRIDFLFNNAGAGFLGPFEELTNEDWEKAFALNFYGALYGIRSVLPIMRAQGSGHIVNIISGIAFFPMASQT
MYSATKAALNGLTLALRYELWDDQIRVTSATPGTTITAIWKDITPPAEAQSAEQSATRILAGVAKNERIVLGDDADLNGI
KKCFDPDAAEYYDAHLLSVARKRKSGEWVF
>Mature_270_residues
MNETAAYYKGRVAIVTGGASGIGLALGETMLAYEASHIILADFNDLNLARETERLNAAYQGKVLGCHCDVTKEEDVRKMM
QSAVEFGGGRIDFLFNNAGAGFLGPFEELTNEDWEKAFALNFYGALYGIRSVLPIMRAQGSGHIVNIISGIAFFPMASQT
MYSATKAALNGLTLALRYELWDDQIRVTSATPGTTITAIWKDITPPAEAQSAEQSATRILAGVAKNERIVLGDDADLNGI
KKCFDPDAAEYYDAHLLSVARKRKSGEWVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=29.6442687747036, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI19923817, Length=198, Percent_Identity=32.3232323232323, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI5031737, Length=233, Percent_Identity=30.0429184549356, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI33667109, Length=205, Percent_Identity=32.1951219512195, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=33.1491712707182, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7657478, Length=194, Percent_Identity=32.9896907216495, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=30.5418719211823, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI109715829, Length=218, Percent_Identity=30.7339449541284, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI40254992, Length=196, Percent_Identity=31.6326530612245, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4503817, Length=229, Percent_Identity=29.2576419213974, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4758504, Length=203, Percent_Identity=33.9901477832512, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=30.4093567251462, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI66933014, Length=168, Percent_Identity=32.7380952380952, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=26.171875, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI83715985, Length=190, Percent_Identity=33.6842105263158, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI20149619, Length=248, Percent_Identity=26.6129032258064, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI59889578, Length=139, Percent_Identity=30.9352517985612, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=31.8725099601594, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787905, Length=215, Percent_Identity=29.7674418604651, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082100, Length=215, Percent_Identity=30.6976744186047, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=30.9178743961353, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787820, Length=187, Percent_Identity=31.0160427807487, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786701, Length=234, Percent_Identity=26.0683760683761, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786812, Length=200, Percent_Identity=28.5, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=26.5873015873016, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=27.4809160305344, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787335, Length=186, Percent_Identity=27.4193548387097, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=201, Percent_Identity=30.3482587064677, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=209, Percent_Identity=28.2296650717703, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=194, Percent_Identity=27.319587628866, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=211, Percent_Identity=31.7535545023697, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=207, Percent_Identity=30.4347826086957, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=219, Percent_Identity=28.310502283105, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=190, Percent_Identity=27.3684210526316, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=252, Percent_Identity=29.7619047619048, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=227, Percent_Identity=23.3480176211454, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322227, Length=206, Percent_Identity=26.2135922330097, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320089, Length=230, Percent_Identity=26.5217391304348, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=32.9896907216495, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24643142, Length=197, Percent_Identity=31.9796954314721, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI281364892, Length=201, Percent_Identity=29.8507462686567, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357041, Length=196, Percent_Identity=32.1428571428571, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=30.1020408163265, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356301, Length=219, Percent_Identity=30.5936073059361, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17737361, Length=197, Percent_Identity=34.010152284264, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=30.8080808080808, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24665247, Length=227, Percent_Identity=28.6343612334802, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355319, Length=212, Percent_Identity=28.7735849056604, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221331216, Length=220, Percent_Identity=29.0909090909091, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571387, Length=214, Percent_Identity=30.3738317757009, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665243, Length=227, Percent_Identity=29.0748898678414, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI116007238, Length=190, Percent_Identity=30.5263157894737, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21358495, Length=243, Percent_Identity=25.5144032921811, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221331218, Length=220, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007234, Length=209, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644339, Length=195, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29350; Mature: 29350

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETAAYYKGRVAIVTGGASGIGLALGETMLAYEASHIILADFNDLNLARETERLNAAYQ
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHC
GKVLGCHCDVTKEEDVRKMMQSAVEFGGGRIDFLFNNAGAGFLGPFEELTNEDWEKAFAL
CCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCHHHHHHHHH
NFYGALYGIRSVLPIMRAQGSGHIVNIISGIAFFPMASQTMYSATKAALNGLTLALRYEL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEEEE
WDDQIRVTSATPGTTITAIWKDITPPAEAQSAEQSATRILAGVAKNERIVLGDDADLNGI
CCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
KKCFDPDAAEYYDAHLLSVARKRKSGEWVF
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNETAAYYKGRVAIVTGGASGIGLALGETMLAYEASHIILADFNDLNLARETERLNAAYQ
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHC
GKVLGCHCDVTKEEDVRKMMQSAVEFGGGRIDFLFNNAGAGFLGPFEELTNEDWEKAFAL
CCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCHHHHHHHHH
NFYGALYGIRSVLPIMRAQGSGHIVNIISGIAFFPMASQTMYSATKAALNGLTLALRYEL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEEEE
WDDQIRVTSATPGTTITAIWKDITPPAEAQSAEQSATRILAGVAKNERIVLGDDADLNGI
CCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
KKCFDPDAAEYYDAHLLSVARKRKSGEWVF
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA