| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119356441
Identifier: 119356441
GI number: 119356441
Start: 678613
End: 679137
Strand: Direct
Name: 119356441
Synonym: Cpha266_0605
Alternate gene names: NA
Gene position: 678613-679137 (Clockwise)
Preceding gene: 119356440
Following gene: 119356442
Centisome position: 21.65
GC content: 44.95
Gene sequence:
>525_bases ATGGGAATGGTTGATTCTCCCAATGAACGCCGGGCTAAAAAAGGCAGAAAGCGGATTCGCAAGAGGATCGGTTTTCATCT CGATATGACCCCTATGGTGGATGTAGCGTTTTTATTGCTGACCTTCTTCATGCTGACGACTACTTTTGCGAAGTCCAATA CTATGGAGATCAGCATGCCGCCTGAGATGGAGGAGGTGAAGATCGCTGAAGCAAATGTCATGACGTTGAGAATTTCAGGA GAAGGCATGGCTTATTGTTCGCTCGGTAATGAGGCGCCTCGCCGGCTTTCGTTGTATGAGAGTGGTGACGCCAGCAGGTT TGCCTTGAGTGCTGAACTGCGGCAGATCTTGAAACAGCAGACCACAGCCAATAAAAAGCTGGTTATTGTGTTGAAAATCA GTGAAAAAGCAAAGTATAAGTATCTGGTTGATGTTATTGATGAGTTGAATCTTATGAAGATTGACCGGTTCAGTCTTGAT GATTTTACTGATCAGGATGAACTTGAAATCAAAAGGGCGGTTTAG
Upstream 100 bases:
>100_bases GCTGGTTTTGATGCGGTGAATCATGCTATAAAAGTGTATAAAAAAGCAAATATGCTTACCTTCAATCTTGTTACCGTGCT TGAAAGGGAGGTTCGCTGAT
Downstream 100 bases:
>100_bases CCGCAAGAAAGAGCAAAGGAGAGTGTAAGGGTGCCATCAAAGCTTGATAAAATCCATGAAGACGCTCGACGGAAAGCTAT GGGCTCATGGTCTATCCGCG
Product: biopolymer transport protein ExbD/TolR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MGMVDSPNERRAKKGRKRIRKRIGFHLDMTPMVDVAFLLLTFFMLTTTFAKSNTMEISMPPEMEEVKIAEANVMTLRISG EGMAYCSLGNEAPRRLSLYESGDASRFALSAELRQILKQQTTANKKLVIVLKISEKAKYKYLVDVIDELNLMKIDRFSLD DFTDQDELEIKRAV
Sequences:
>Translated_174_residues MGMVDSPNERRAKKGRKRIRKRIGFHLDMTPMVDVAFLLLTFFMLTTTFAKSNTMEISMPPEMEEVKIAEANVMTLRISG EGMAYCSLGNEAPRRLSLYESGDASRFALSAELRQILKQQTTANKKLVIVLKISEKAKYKYLVDVIDELNLMKIDRFSLD DFTDQDELEIKRAV >Mature_173_residues GMVDSPNERRAKKGRKRIRKRIGFHLDMTPMVDVAFLLLTFFMLTTTFAKSNTMEISMPPEMEEVKIAEANVMTLRISGE GMAYCSLGNEAPRRLSLYESGDASRFALSAELRQILKQQTTANKKLVIVLKISEKAKYKYLVDVIDELNLMKIDRFSLDD FTDQDELEIKRAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19920; Mature: 19788
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 6.3 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMVDSPNERRAKKGRKRIRKRIGFHLDMTPMVDVAFLLLTFFMLTTTFAKSNTMEISMP CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC PEMEEVKIAEANVMTLRISGEGMAYCSLGNEAPRRLSLYESGDASRFALSAELRQILKQQ CCHHHEEEECCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH TTANKKLVIVLKISEKAKYKYLVDVIDELNLMKIDRFSLDDFTDQDELEIKRAV HCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHEECCC >Mature Secondary Structure GMVDSPNERRAKKGRKRIRKRIGFHLDMTPMVDVAFLLLTFFMLTTTFAKSNTMEISMP CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC PEMEEVKIAEANVMTLRISGEGMAYCSLGNEAPRRLSLYESGDASRFALSAELRQILKQQ CCHHHEEEECCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH TTANKKLVIVLKISEKAKYKYLVDVIDELNLMKIDRFSLDDFTDQDELEIKRAV HCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA