| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is yaeT [H]
Identifier: 119356236
GI number: 119356236
Start: 439729
End: 442221
Strand: Reverse
Name: yaeT [H]
Synonym: Cpha266_0397
Alternate gene names: 119356236
Gene position: 442221-439729 (Counterclockwise)
Preceding gene: 119356237
Following gene: 119356235
Centisome position: 14.11
GC content: 48.5
Gene sequence:
>2493_bases ATGAAAAAAATGCAAAAACTGATAACCCTGGTACTGGTAGCCCTTGCCGTAAACGCTACAGGACAAACTGCCGAAGCTAA AAGCAAGCCCGTAAAACAATCGGTAACAGCAACACAGGCAAAAACACCCGCGGAGAAAAAAGATCTCTATACGATAAGCG CAATTTCCTTCACCGGTCTTCAATCGCTTAACGAGCAGGAACTTATTGCAAGTCTTCCCATAAAAATCGGCAACAACATC GCGGTACCCGGGGCTGAACTGTCAGCAACCATGCAATACCTCTGGAATCTGCAGGTTTTCAAAAATATCACCCTGGAAAA ATCCAATCCCGGCACCAAAAACGTAGCGCTGCACTTTATTGTCGAAGAACAGCCGTTACTTGAAGAGGTCGTTTTTAAAG GCAACGAAAAATTCGACCTTGACAAACTGCAGAAAACCGCCGACATTCAAACAGGTAAAAAGCTCAGTGAGCAGGAACTG CTCACGGCCGCAAACAAAATAGAAAAGCTCTATGCCGACAAGGGGTATCTGACTGCAGGAGCGGAATACAAACTGGAGGC TATCGGAAAAAACAAGGTCAAAGCAGTTTTCACTATCACTGAAGGCCGGAAGGTAGTTATTGAAAAAATCCGTTTCCACG GCAACAATGCCTTCAGCCAGGGCAAGCTCAGAGGGGTGTTCAAGGAGACTACCCAAAACTCATGGTGGAGAAAAATCTTT GGAGCCCCCAAACTCGACAAGGATAAATTCGCCACCGACAAGGATCTCCTCGTCGATTTTTATCGGGAAAACGGTTATCG GGACGCAAAAGTTGTCAGCGACTCCATCAGCTATACCCCCGATAATAAAGGTCTCTTTCTTGATATCACGATAGAGGAGG GACCGAAATACCATATCGGCACCATAACATGGACAGGAAACTCCAAAGATTTCGCCACCACAGAAATCCTTGAAAAAACA TTCGGAATAAAAACCGGCGATCTCTATAACGCAAAACTCATCCAGGAAAGACTGAACTTCTCACAGGACAACAGCGATGT AAGCTCGATCTACCTTGACAGGGGGTACCTCTCCTACAGGGCCAACCTTGACGAGGTGGTCGTGAATCCTGACACGGTCA ATCTTCTCATCAGCATTCGTGAAGGCGAACAGTATCAGTTGAATCTGGTGAACATCACCGGCAACACCAAAACCAAAGAC CATGTCATCCGCCGTGAATTGTACACCATCCCCGGTGAAATGTTCAGCCGCAAAAACGTCATCCGCAGTATCAGGGAGCT TAACATGCTCAACTACTTTGATGCTGAAAAACTTGCTCCCGAAATTCAGCCCAACGAAGAGAATAACACAGTCGACCTGA CCTATTCGGTATCTGAAAAACAGAGCGACACCTTCAACGCATCGATCGGATATGGAGGATCGAGCGGCTTTACCGGCACA CTCGGCGTCACCTTCAACAACTTCTCGCTGCAGGATATTTTTGATGCCGATGCCTACAGACCTCTTCCGCATGGTGACGG TCAGAAACTCTCCTTCCAATGGCAGTTCGGCAGCGACAACTACCGCACGCTTGCCCTGTCGTTTACGGAACCATGGGCAT TCGGAGGCCCGACAACCGTTGGCTTTTCAGCCTTTAAAACACACCGCACCTATGACTATACAGGCACAGACTCATCGATT GAGAACAAAACGATCGATCAGTACGGAACCATTCTCACTATCGGCAGACGTCTGACCTGGCCCGACGACTATTTCGCCGT CGGACTTAAACTGAAATACCTGCACAACAAAGGCGGATTTGTGAGCTTTATCAACGAAACAGGTATTAACGTTCCGGATG AAGCCGACGAGTATTCAATCACCGGAACAATATCACGCAACAGCATCGACAGCCCGATCTACCCGCGCCGAGGCAGCAAA AACACACTCACCGCCCAGCTTGCAGGGGGCCCTCTTCCCGGCACTATCGACTTCTATAAATTCACAGGAAACTCAACCTG GTTTTTCCCGCTGTCGAGAAAACTGGTGCTGAACATGTCTGCCCAGGCTGGATACCTCTCAACCTTTAATAAAAGCGACT ACATCCCCTATACAGAGTATTTCTATATGGGAGGAAGCGGCATGTCTTCTCTGCCCACCGTTCCGATGCGCGGTTACGAC GACCGCAGTTTCGGCGCACTGCTTGAAACCGATTCCGACCTGTATGGCGGCACCATTTACACAAAGTTCACAACAGAACT TCGCTATCCTATAACGCTCTCGCCATCCGTAAGCGTCTATGGACTCGCTTTCTTCGATGCAGGAAACCTCTGGCAAGACA GTGAATCCGTTGATTTCAGCGACCTCAAAAAGTCCGTCGGCGTAGGACTCAGGGTTTATCTTCCGATTATCGGAATGGTT GGCCTTGATTACGGATACGGTATGGACACCGTGCCCGGAGACATGGAAAAAGGATGGGGATTCATGTTCACTTTTGGCAC ATCGACAGAGTGA
Upstream 100 bases:
>100_bases ATCAAAACAGAGAAAGAAGGTTTGGCCAGACAAGTGAACAAATTCAGAAAAAAAACACAGCAAACAGCAAGATTTAACTC TGACCGATCCGAAAGATTCT
Downstream 100 bases:
>100_bases AAGATCGGAAACTGTTTCTTTTACTCACTTTTTTTTTGTGATAATGAGTTGAAACCGTATATTTGACATGAATGAACACA CAGATTTGTTTGTTTTTTAA
Product: surface antigen (D15)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 830; Mature: 830
Protein sequence:
>830_residues MKKMQKLITLVLVALAVNATGQTAEAKSKPVKQSVTATQAKTPAEKKDLYTISAISFTGLQSLNEQELIASLPIKIGNNI AVPGAELSATMQYLWNLQVFKNITLEKSNPGTKNVALHFIVEEQPLLEEVVFKGNEKFDLDKLQKTADIQTGKKLSEQEL LTAANKIEKLYADKGYLTAGAEYKLEAIGKNKVKAVFTITEGRKVVIEKIRFHGNNAFSQGKLRGVFKETTQNSWWRKIF GAPKLDKDKFATDKDLLVDFYRENGYRDAKVVSDSISYTPDNKGLFLDITIEEGPKYHIGTITWTGNSKDFATTEILEKT FGIKTGDLYNAKLIQERLNFSQDNSDVSSIYLDRGYLSYRANLDEVVVNPDTVNLLISIREGEQYQLNLVNITGNTKTKD HVIRRELYTIPGEMFSRKNVIRSIRELNMLNYFDAEKLAPEIQPNEENNTVDLTYSVSEKQSDTFNASIGYGGSSGFTGT LGVTFNNFSLQDIFDADAYRPLPHGDGQKLSFQWQFGSDNYRTLALSFTEPWAFGGPTTVGFSAFKTHRTYDYTGTDSSI ENKTIDQYGTILTIGRRLTWPDDYFAVGLKLKYLHNKGGFVSFINETGINVPDEADEYSITGTISRNSIDSPIYPRRGSK NTLTAQLAGGPLPGTIDFYKFTGNSTWFFPLSRKLVLNMSAQAGYLSTFNKSDYIPYTEYFYMGGSGMSSLPTVPMRGYD DRSFGALLETDSDLYGGTIYTKFTTELRYPITLSPSVSVYGLAFFDAGNLWQDSESVDFSDLKKSVGVGLRVYLPIIGMV GLDYGYGMDTVPGDMEKGWGFMFTFGTSTE
Sequences:
>Translated_830_residues MKKMQKLITLVLVALAVNATGQTAEAKSKPVKQSVTATQAKTPAEKKDLYTISAISFTGLQSLNEQELIASLPIKIGNNI AVPGAELSATMQYLWNLQVFKNITLEKSNPGTKNVALHFIVEEQPLLEEVVFKGNEKFDLDKLQKTADIQTGKKLSEQEL LTAANKIEKLYADKGYLTAGAEYKLEAIGKNKVKAVFTITEGRKVVIEKIRFHGNNAFSQGKLRGVFKETTQNSWWRKIF GAPKLDKDKFATDKDLLVDFYRENGYRDAKVVSDSISYTPDNKGLFLDITIEEGPKYHIGTITWTGNSKDFATTEILEKT FGIKTGDLYNAKLIQERLNFSQDNSDVSSIYLDRGYLSYRANLDEVVVNPDTVNLLISIREGEQYQLNLVNITGNTKTKD HVIRRELYTIPGEMFSRKNVIRSIRELNMLNYFDAEKLAPEIQPNEENNTVDLTYSVSEKQSDTFNASIGYGGSSGFTGT LGVTFNNFSLQDIFDADAYRPLPHGDGQKLSFQWQFGSDNYRTLALSFTEPWAFGGPTTVGFSAFKTHRTYDYTGTDSSI ENKTIDQYGTILTIGRRLTWPDDYFAVGLKLKYLHNKGGFVSFINETGINVPDEADEYSITGTISRNSIDSPIYPRRGSK NTLTAQLAGGPLPGTIDFYKFTGNSTWFFPLSRKLVLNMSAQAGYLSTFNKSDYIPYTEYFYMGGSGMSSLPTVPMRGYD DRSFGALLETDSDLYGGTIYTKFTTELRYPITLSPSVSVYGLAFFDAGNLWQDSESVDFSDLKKSVGVGLRVYLPIIGMV GLDYGYGMDTVPGDMEKGWGFMFTFGTSTE >Mature_830_residues MKKMQKLITLVLVALAVNATGQTAEAKSKPVKQSVTATQAKTPAEKKDLYTISAISFTGLQSLNEQELIASLPIKIGNNI AVPGAELSATMQYLWNLQVFKNITLEKSNPGTKNVALHFIVEEQPLLEEVVFKGNEKFDLDKLQKTADIQTGKKLSEQEL LTAANKIEKLYADKGYLTAGAEYKLEAIGKNKVKAVFTITEGRKVVIEKIRFHGNNAFSQGKLRGVFKETTQNSWWRKIF GAPKLDKDKFATDKDLLVDFYRENGYRDAKVVSDSISYTPDNKGLFLDITIEEGPKYHIGTITWTGNSKDFATTEILEKT FGIKTGDLYNAKLIQERLNFSQDNSDVSSIYLDRGYLSYRANLDEVVVNPDTVNLLISIREGEQYQLNLVNITGNTKTKD HVIRRELYTIPGEMFSRKNVIRSIRELNMLNYFDAEKLAPEIQPNEENNTVDLTYSVSEKQSDTFNASIGYGGSSGFTGT LGVTFNNFSLQDIFDADAYRPLPHGDGQKLSFQWQFGSDNYRTLALSFTEPWAFGGPTTVGFSAFKTHRTYDYTGTDSSI ENKTIDQYGTILTIGRRLTWPDDYFAVGLKLKYLHNKGGFVSFINETGINVPDEADEYSITGTISRNSIDSPIYPRRGSK NTLTAQLAGGPLPGTIDFYKFTGNSTWFFPLSRKLVLNMSAQAGYLSTFNKSDYIPYTEYFYMGGSGMSSLPTVPMRGYD DRSFGALLETDSDLYGGTIYTKFTTELRYPITLSPSVSVYGLAFFDAGNLWQDSESVDFSDLKKSVGVGLRVYLPIIGMV GLDYGYGMDTVPGDMEKGWGFMFTFGTSTE
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=843, Percent_Identity=23.2502965599051, Blast_Score=175, Evalue=9e-45,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 92642; Mature: 92642
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKMQKLITLVLVALAVNATGQTAEAKSKPVKQSVTATQAKTPAEKKDLYTISAISFTGL CHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEHHH QSLNEQELIASLPIKIGNNIAVPGAELSATMQYLWNLQVFKNITLEKSNPGTKNVALHFI HCCCHHHHHHHCCEEECCEEECCCHHHHHHHHHHHCEEEHHEEEEECCCCCCCCEEEEEE VEEQPLLEEVVFKGNEKFDLDKLQKTADIQTGKKLSEQELLTAANKIEKLYADKGYLTAG ECCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC AEYKLEAIGKNKVKAVFTITEGRKVVIEKIRFHGNNAFSQGKLRGVFKETTQNSWWRKIF CCEEEEECCCCCEEEEEEEECCCEEEEEEHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHH GAPKLDKDKFATDKDLLVDFYRENGYRDAKVVSDSISYTPDNKGLFLDITIEEGPKYHIG CCCCCCHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEE TITWTGNSKDFATTEILEKTFGIKTGDLYNAKLIQERLNFSQDNSDVSSIYLDRGYLSYR EEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEEEEE ANLDEVVVNPDTVNLLISIREGEQYQLNLVNITGNTKTKDHVIRRELYTIPGEMFSRKNV CCCCEEEECCCEEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHH IRSIRELNMLNYFDAEKLAPEIQPNEENNTVDLTYSVSEKQSDTFNASIGYGGSSGFTGT HHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEEE LGVTFNNFSLQDIFDADAYRPLPHGDGQKLSFQWQFGSDNYRTLALSFTEPWAFGGPTTV EEEEEECCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCC GFSAFKTHRTYDYTGTDSSIENKTIDQYGTILTIGRRLTWPDDYFAVGLKLKYLHNKGGF CCHHHHCCCEEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCEEEEEEEEEEEECCCCE VSFINETGINVPDEADEYSITGTISRNSIDSPIYPRRGSKNTLTAQLAGGPLPGTIDFYK EEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE FTGNSTWFFPLSRKLVLNMSAQAGYLSTFNKSDYIPYTEYFYMGGSGMSSLPTVPMRGYD EECCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC DRSFGALLETDSDLYGGTIYTKFTTELRYPITLSPSVSVYGLAFFDAGNLWQDSESVDFS CCCCCEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHH DLKKSVGVGLRVYLPIIGMVGLDYGYGMDTVPGDMEKGWGFMFTFGTSTE HHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCC >Mature Secondary Structure MKKMQKLITLVLVALAVNATGQTAEAKSKPVKQSVTATQAKTPAEKKDLYTISAISFTGL CHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEHHH QSLNEQELIASLPIKIGNNIAVPGAELSATMQYLWNLQVFKNITLEKSNPGTKNVALHFI HCCCHHHHHHHCCEEECCEEECCCHHHHHHHHHHHCEEEHHEEEEECCCCCCCCEEEEEE VEEQPLLEEVVFKGNEKFDLDKLQKTADIQTGKKLSEQELLTAANKIEKLYADKGYLTAG ECCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC AEYKLEAIGKNKVKAVFTITEGRKVVIEKIRFHGNNAFSQGKLRGVFKETTQNSWWRKIF CCEEEEECCCCCEEEEEEEECCCEEEEEEHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHH GAPKLDKDKFATDKDLLVDFYRENGYRDAKVVSDSISYTPDNKGLFLDITIEEGPKYHIG CCCCCCHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEE TITWTGNSKDFATTEILEKTFGIKTGDLYNAKLIQERLNFSQDNSDVSSIYLDRGYLSYR EEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEEEEE ANLDEVVVNPDTVNLLISIREGEQYQLNLVNITGNTKTKDHVIRRELYTIPGEMFSRKNV CCCCEEEECCCEEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHH IRSIRELNMLNYFDAEKLAPEIQPNEENNTVDLTYSVSEKQSDTFNASIGYGGSSGFTGT HHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEEE LGVTFNNFSLQDIFDADAYRPLPHGDGQKLSFQWQFGSDNYRTLALSFTEPWAFGGPTTV EEEEEECCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCC GFSAFKTHRTYDYTGTDSSIENKTIDQYGTILTIGRRLTWPDDYFAVGLKLKYLHNKGGF CCHHHHCCCEEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCEEEEEEEEEEEECCCCE VSFINETGINVPDEADEYSITGTISRNSIDSPIYPRRGSKNTLTAQLAGGPLPGTIDFYK EEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE FTGNSTWFFPLSRKLVLNMSAQAGYLSTFNKSDYIPYTEYFYMGGSGMSSLPTVPMRGYD EECCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC DRSFGALLETDSDLYGGTIYTKFTTELRYPITLSPSVSVYGLAFFDAGNLWQDSESVDFS CCCCCEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHH DLKKSVGVGLRVYLPIIGMVGLDYGYGMDTVPGDMEKGWGFMFTFGTSTE HHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA