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The map label for this gene is fni

Identifier: 119356224

GI number: 119356224

Start: 425301

End: 426392

Strand: Reverse

Name: fni

Synonym: Cpha266_0385

Alternate gene names: 119356224

Gene position: 426392-425301 (Counterclockwise)

Preceding gene: 119356226

Following gene: 119356223

Centisome position: 13.61

GC content: 49.36

Gene sequence:

>1092_bases
ATGAACGAGAAACTTTCAACTCCTTCAAATATAACAATTGAACGAAAGCTCAACCATGTGGAAATATGCCTGCACGGCAA
TGTATCCTTTGAGGGAACAACCACAGGGCTGGAACGCTATGCGATTGAGCATCAGGCCGTCCCGGAAATCAATTACGCCG
ATATAAACCTCTCGGCAACACTGCTTGGCAGAACGATAGGAGCTCCTCTCATGATCTCCTCCATGACCGGAGGCTACCAT
GAAGCGGCTACGCTTAACCGTCAATTCGCTCAGGCAGCAGAACATTTCCGTATACCACTCGGTGTCGGCAGCATGCGACA
GGCACTTGAAAACAATGAACACAGGGAAAGTTTTGCTGTTGTTCGCAAAGCAGCGCCGTCAGTTCCGGTTTTTGCCAACA
TCGGTGCTCCCGAGGTTGCAGCAGGACTGGAAAGCTCTCAGATCGAAACCATGCTTGACCTTATCCAGGCTGACGGCCTG
ATTGTTCATCTCAATGCAGCCCAGGAGCTTTTTCAGCCTGAAGGCAACACCAATTTTCATGGATTTCTCGATCAACTTGC
CTCTCTGACAGCAAAAACTCCCGTTCCTGTTATCGCAAAAGAGGTTGGCAGTGGCATTTCAGCAGAAGCCGCCCGTCTGC
TCATCGATGCCGGCGTCAAAGTTATCGATGTAGCCGGCGCAGGCGGCACCAGTTGGCAGAAAGTTGAAGAGGTTCGTTAT
ATAAAACGTTTCGGTAATGAAAATCGCTTCAGCCCTGAAGCGCTCAATGAACTTCTGAACTGGGGAATACCAACCGCAAC
ATGTCTTGAAGAGATCGGCAGACTCAAAAAAAACCATCCGCAGTACCAACCAATTGAAATCATCGCATCGGGAGGAATTC
AGAGCGGAATAGATGTAGCCAAAACCATTCTGCTCGGTGCCTCCGTTGCAGCTTCTGCAGGAAGGCTTCTTAAAGCGCTC
CATGAAGGCAAGCTCCTGCAAACCATCGAAATGTGGCTGAACGACCTCAAGGCGGTGATGTTTCTTACCGGCTCTCTCTC
TCTGGAACAGCTTCAAAAAAAACGCATGACTCTTAAACATCTTCCGACTTAG

Upstream 100 bases:

>100_bases
GTTTACGGGCAAACTAAAAAGTTGGGATATTTTTATTAAGTTACATCTTTAACTATCAGTAAGGCAACTCCTTCACAGAA
ACAGGCGATCTGAACGCAAC

Downstream 100 bases:

>100_bases
TAATGAACATGTCTATCACACAGGAACTTGTCGAAAAAAAGTATCGCCTCTACCACAACCTTATCAATGAAGCTCTCGCA
AGCTGCTTCAGCGCCGAAGC

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MNEKLSTPSNITIERKLNHVEICLHGNVSFEGTTTGLERYAIEHQAVPEINYADINLSATLLGRTIGAPLMISSMTGGYH
EAATLNRQFAQAAEHFRIPLGVGSMRQALENNEHRESFAVVRKAAPSVPVFANIGAPEVAAGLESSQIETMLDLIQADGL
IVHLNAAQELFQPEGNTNFHGFLDQLASLTAKTPVPVIAKEVGSGISAEAARLLIDAGVKVIDVAGAGGTSWQKVEEVRY
IKRFGNENRFSPEALNELLNWGIPTATCLEEIGRLKKNHPQYQPIEIIASGGIQSGIDVAKTILLGASVAASAGRLLKAL
HEGKLLQTIEMWLNDLKAVMFLTGSLSLEQLQKKRMTLKHLPT

Sequences:

>Translated_363_residues
MNEKLSTPSNITIERKLNHVEICLHGNVSFEGTTTGLERYAIEHQAVPEINYADINLSATLLGRTIGAPLMISSMTGGYH
EAATLNRQFAQAAEHFRIPLGVGSMRQALENNEHRESFAVVRKAAPSVPVFANIGAPEVAAGLESSQIETMLDLIQADGL
IVHLNAAQELFQPEGNTNFHGFLDQLASLTAKTPVPVIAKEVGSGISAEAARLLIDAGVKVIDVAGAGGTSWQKVEEVRY
IKRFGNENRFSPEALNELLNWGIPTATCLEEIGRLKKNHPQYQPIEIIASGGIQSGIDVAKTILLGASVAASAGRLLKAL
HEGKLLQTIEMWLNDLKAVMFLTGSLSLEQLQKKRMTLKHLPT
>Mature_363_residues
MNEKLSTPSNITIERKLNHVEICLHGNVSFEGTTTGLERYAIEHQAVPEINYADINLSATLLGRTIGAPLMISSMTGGYH
EAATLNRQFAQAAEHFRIPLGVGSMRQALENNEHRESFAVVRKAAPSVPVFANIGAPEVAAGLESSQIETMLDLIQADGL
IVHLNAAQELFQPEGNTNFHGFLDQLASLTAKTPVPVIAKEVGSGISAEAARLLIDAGVKVIDVAGAGGTSWQKVEEVRY
IKRFGNENRFSPEALNELLNWGIPTATCLEEIGRLKKNHPQYQPIEIIASGGIQSGIDVAKTILLGASVAASAGRLLKAL
HEGKLLQTIEMWLNDLKAVMFLTGSLSLEQLQKKRMTLKHLPT

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_CHLPD (A1BDG7)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_910868.1
- STRING:   A1BDG7
- GeneID:   4568978
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_0385
- NMPDR:   fig|290317.7.peg.393
- eggNOG:   COG1304
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 39251; Mature: 39251

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKLSTPSNITIERKLNHVEICLHGNVSFEGTTTGLERYAIEHQAVPEINYADINLSAT
CCCCCCCCCCEEEEECCCEEEEEEECCEEECCCHHHHHHHHHHHHCCCCCCEEECCCHHH
LLGRTIGAPLMISSMTGGYHEAATLNRQFAQAAEHFRIPLGVGSMRQALENNEHRESFAV
HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHH
VRKAAPSVPVFANIGAPEVAAGLESSQIETMLDLIQADGLIVHLNAAQELFQPEGNTNFH
HHHCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHH
GFLDQLASLTAKTPVPVIAKEVGSGISAEAARLLIDAGVKVIDVAGAGGTSWQKVEEVRY
HHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
IKRFGNENRFSPEALNELLNWGIPTATCLEEIGRLKKNHPQYQPIEIIASGGIQSGIDVA
HHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
KTILLGASVAASAGRLLKALHEGKLLQTIEMWLNDLKAVMFLTGSLSLEQLQKKRMTLKH
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
LPT
CCC
>Mature Secondary Structure
MNEKLSTPSNITIERKLNHVEICLHGNVSFEGTTTGLERYAIEHQAVPEINYADINLSAT
CCCCCCCCCCEEEEECCCEEEEEEECCEEECCCHHHHHHHHHHHHCCCCCCEEECCCHHH
LLGRTIGAPLMISSMTGGYHEAATLNRQFAQAAEHFRIPLGVGSMRQALENNEHRESFAV
HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHH
VRKAAPSVPVFANIGAPEVAAGLESSQIETMLDLIQADGLIVHLNAAQELFQPEGNTNFH
HHHCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHH
GFLDQLASLTAKTPVPVIAKEVGSGISAEAARLLIDAGVKVIDVAGAGGTSWQKVEEVRY
HHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
IKRFGNENRFSPEALNELLNWGIPTATCLEEIGRLKKNHPQYQPIEIIASGGIQSGIDVA
HHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
KTILLGASVAASAGRLLKALHEGKLLQTIEMWLNDLKAVMFLTGSLSLEQLQKKRMTLKH
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
LPT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA