| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is 119356220
Identifier: 119356220
GI number: 119356220
Start: 421522
End: 422085
Strand: Reverse
Name: 119356220
Synonym: Cpha266_0381
Alternate gene names: NA
Gene position: 422085-421522 (Counterclockwise)
Preceding gene: 119356222
Following gene: 119356219
Centisome position: 13.47
GC content: 45.74
Gene sequence:
>564_bases ATGACAACTTTAATTATGAAACCGATGTATAATCGAAAAGGATTTATGAGTGTTGTGCGCAAAATAGTCATGGCGTCACT CCTCGGATTGATGCTCGGAGCTCCAGCGACAGTACATGCGGAAACTGTCGGGGTAGTGGATTTCGGCAAGATTCTTTTAC AGATGCCTGAAAGAAAGCAAGCGGAAACCACCCTGCAGGCAATGGCAACCCCCTTTCAGAATGAGCTGGAAAGGATGTCG CAGGATTTGCAGAAAGGGCTTGTTGCTTATGAACAGCAAAAAGCTTCAATGGCAAAACCCGCAAGAGAAGTTAAAGAAAA AGAACTGAACACCAAAGCTCAGGCAATCCAGAAGTACAAGCTGGAAAAGTTCGGACAGGAAGGTCTTGTCGCCAAAAAAG AACAGGAACTCCTGATACCTATTCGCCAGAAGATTGTAGCTTCTGTTCAGACTATTGCCCAGAAAGAGGGGTTCACCCTG GTACTGGACAAGGGCGCCATGATTTACGGCACCCCTGCAAGCGATCTTACTTTCAAGGTGATGAATCAGCTCAATCTCAA ATAA
Upstream 100 bases:
>100_bases TTTGACTCTCTTCCGCTTTTATGGTTTTAATCAGGGAATTATTACCTTTGAGGGTATAATTTTCGATTCATGAATATTAT ACTGGTTCAGAAAATAATCA
Downstream 100 bases:
>100_bases AAAGGCTCTGATTGCTCTTGAAAAGATTCATCTTTTTGTTTTTAACGGTCTTTGCATTTGTTATGTCGGGATGCGGCGCT CCCCAATCTGAGCGCCGCAA
Product: outer membrane chaperone Skp (OmpH)
Products: NA
Alternate protein names: Cationic Outer Membrane Protein OmpH; Outer Membrane Protein OmpH; Cationic Outer Membrane Protein; Outer Membrane Protein; OmpH Family Outer Membrane Protein; Cationic
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MTTLIMKPMYNRKGFMSVVRKIVMASLLGLMLGAPATVHAETVGVVDFGKILLQMPERKQAETTLQAMATPFQNELERMS QDLQKGLVAYEQQKASMAKPAREVKEKELNTKAQAIQKYKLEKFGQEGLVAKKEQELLIPIRQKIVASVQTIAQKEGFTL VLDKGAMIYGTPASDLTFKVMNQLNLK
Sequences:
>Translated_187_residues MTTLIMKPMYNRKGFMSVVRKIVMASLLGLMLGAPATVHAETVGVVDFGKILLQMPERKQAETTLQAMATPFQNELERMS QDLQKGLVAYEQQKASMAKPAREVKEKELNTKAQAIQKYKLEKFGQEGLVAKKEQELLIPIRQKIVASVQTIAQKEGFTL VLDKGAMIYGTPASDLTFKVMNQLNLK >Mature_186_residues TTLIMKPMYNRKGFMSVVRKIVMASLLGLMLGAPATVHAETVGVVDFGKILLQMPERKQAETTLQAMATPFQNELERMSQ DLQKGLVAYEQQKASMAKPAREVKEKELNTKAQAIQKYKLEKFGQEGLVAKKEQELLIPIRQKIVASVQTIAQKEGFTLV LDKGAMIYGTPASDLTFKVMNQLNLK
Specific function: Unknown
COG id: COG2825
COG function: function code M; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20888; Mature: 20757
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.4 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLIMKPMYNRKGFMSVVRKIVMASLLGLMLGAPATVHAETVGVVDFGKILLQMPERKQ CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCHHH AETTLQAMATPFQNELERMSQDLQKGLVAYEQQKASMAKPAREVKEKELNTKAQAIQKYK HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEKFGQEGLVAKKEQELLIPIRQKIVASVQTIAQKEGFTLVLDKGAMIYGTPASDLTFKV HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCHHHHHHH MNQLNLK HHHHCCC >Mature Secondary Structure TTLIMKPMYNRKGFMSVVRKIVMASLLGLMLGAPATVHAETVGVVDFGKILLQMPERKQ CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCHHH AETTLQAMATPFQNELERMSQDLQKGLVAYEQQKASMAKPAREVKEKELNTKAQAIQKYK HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEKFGQEGLVAKKEQELLIPIRQKIVASVQTIAQKEGFTLVLDKGAMIYGTPASDLTFKV HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCHHHHHHH MNQLNLK HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA