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The map label for this gene is sdhB [H]

Identifier: 119355950

GI number: 119355950

Start: 116027

End: 116800

Strand: Reverse

Name: sdhB [H]

Synonym: Cpha266_0100

Alternate gene names: 119355950

Gene position: 116800-116027 (Counterclockwise)

Preceding gene: 119355951

Following gene: 119355949

Centisome position: 3.73

GC content: 54.26

Gene sequence:

>774_bases
ATGAATTTCACGCTCAAAATCTGGCGACAGAGCAACACCAAAGCAAAAGGCGGTCTGGTTACCTACAACGTTGCGGATAT
ATCGGCTGAATGCTCGTTTTTCGAGATGCTCGATATCCTCAACCAGCAACTGATCACCAGCGGGAATGATCCCGTATCCT
TCGATCACGACTGCCGCGAAGGAATATGCGGCACCTGCAGCCTCTATATCAACGGCAGGCCGCACGGACCGCTCAAGGGC
ATAACCACCTGCCAGTTACACATGCGCTCCTTCAGCGATGGAGATACCATTACGATTGAACCATGGAGAGCAAAAGCCTT
TCCCATTGTCAGAGATCTGATTGTCGACCGAAGCGCTCTTGATAAAATCATCCAGGCGGGCGGCTACATCTCGGTCAACA
CCGGAGGCATTCCCGATGCCAACACCCTGCCGGTACAAAAAGAGCGCTCCGACGCATCGTTCGATGCCGCCGCATGCATC
GGCTGCGGCGCATGCGTCGCAGCCTGTCCCAACGCCTCAGCCATGCTCTTTGCAGGAGCAAAGGTCTCGCACCTCTCGCT
GCTTCCGCAGGGAAAAATCGAGGCAGCCCGTCGCGTCAGAAATATGGTCGCCTGCATGGACGAGCTTGGTTTCGGTAACT
GCAGCAACAGCTACGCCTGCGAAGCAGAGTGCCCAAAAGGGATATCCGTTTCGGTCATTGCGCGCATGAACCGGGAGTTT
CTCGGAGCAAAACTGTTTTCAGAAAAAGACAAAGCTATCAGAAACGCGCTATGA

Upstream 100 bases:

>100_bases
ATGGATGTATAACGGGCCTGACACAAAACCATCTCTGCACCGCGAAAACCTGCAATTCAGCGAGATCAAACTCTCGCAGA
GATGCTATAAATAATTGACG

Downstream 100 bases:

>100_bases
GTCACACAAACCTCGCCTCATTATAGCGCCGAGAGCCCGTCGCTCGGCGAATGCCCTGGTATATCGCCTATCGAGTCCGT
CATAAGTCGATGCGCTTTTT

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNFTLKIWRQSNTKAKGGLVTYNVADISAECSFFEMLDILNQQLITSGNDPVSFDHDCREGICGTCSLYINGRPHGPLKG
ITTCQLHMRSFSDGDTITIEPWRAKAFPIVRDLIVDRSALDKIIQAGGYISVNTGGIPDANTLPVQKERSDASFDAAACI
GCGACVAACPNASAMLFAGAKVSHLSLLPQGKIEAARRVRNMVACMDELGFGNCSNSYACEAECPKGISVSVIARMNREF
LGAKLFSEKDKAIRNAL

Sequences:

>Translated_257_residues
MNFTLKIWRQSNTKAKGGLVTYNVADISAECSFFEMLDILNQQLITSGNDPVSFDHDCREGICGTCSLYINGRPHGPLKG
ITTCQLHMRSFSDGDTITIEPWRAKAFPIVRDLIVDRSALDKIIQAGGYISVNTGGIPDANTLPVQKERSDASFDAAACI
GCGACVAACPNASAMLFAGAKVSHLSLLPQGKIEAARRVRNMVACMDELGFGNCSNSYACEAECPKGISVSVIARMNREF
LGAKLFSEKDKAIRNAL
>Mature_257_residues
MNFTLKIWRQSNTKAKGGLVTYNVADISAECSFFEMLDILNQQLITSGNDPVSFDHDCREGICGTCSLYINGRPHGPLKG
ITTCQLHMRSFSDGDTITIEPWRAKAFPIVRDLIVDRSALDKIIQAGGYISVNTGGIPDANTLPVQKERSDASFDAAACI
GCGACVAACPNASAMLFAGAKVSHLSLLPQGKIEAARRVRNMVACMDELGFGNCSNSYACEAECPKGISVSVIARMNREF
LGAKLFSEKDKAIRNAL

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27679; Mature: 27679

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTLKIWRQSNTKAKGGLVTYNVADISAECSFFEMLDILNQQLITSGNDPVSFDHDCRE
CCEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
GICGTCSLYINGRPHGPLKGITTCQLHMRSFSDGDTITIEPWRAKAFPIVRDLIVDRSAL
CCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHCHHHH
DKIIQAGGYISVNTGGIPDANTLPVQKERSDASFDAAACIGCGACVAACPNASAMLFAGA
HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
KVSHLSLLPQGKIEAARRVRNMVACMDELGFGNCSNSYACEAECPKGISVSVIARMNREF
CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEHHHHHHHHHH
LGAKLFSEKDKAIRNAL
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNFTLKIWRQSNTKAKGGLVTYNVADISAECSFFEMLDILNQQLITSGNDPVSFDHDCRE
CCEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
GICGTCSLYINGRPHGPLKGITTCQLHMRSFSDGDTITIEPWRAKAFPIVRDLIVDRSAL
CCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHCHHHH
DKIIQAGGYISVNTGGIPDANTLPVQKERSDASFDAAACIGCGACVAACPNASAMLFAGA
HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
KVSHLSLLPQGKIEAARRVRNMVACMDELGFGNCSNSYACEAECPKGISVSVIARMNREF
CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEHHHHHHHHHH
LGAKLFSEKDKAIRNAL
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]