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The map label for this gene is radC [C]

Identifier: 118581981

GI number: 118581981

Start: 3962333

End: 3963022

Strand: Reverse

Name: radC [C]

Synonym: Ppro_3582

Alternate gene names: 118581981

Gene position: 3963022-3962333 (Counterclockwise)

Preceding gene: 118581982

Following gene: 118581980

Centisome position: 98.88

GC content: 63.91

Gene sequence:

>690_bases
ATGTGCCCAGGAATCAGAGAGTGGCCGGAGGATGAACGGCCGCGGGAGAAGATGCTCAGAAAGGGCGCGGCCAGTCTCAG
CGACGCGGAGCTGCTGGCGCTGATCATCCGCACCGGCGATACCGCCACCGGGAAGAGCGCCATCGACCTGGGGCGGGAAC
TGATCAGCCTCTTCGGTTCCAGCCTGCGTGAGCTGGGGAGCGCCGACATGGCCGAGATCACCGCCATCAAGGGAATGGGG
ATGGCAAAGGCGGCAGGAGTCAAGGCGGCCTTCACCCTGGCGTCCCGTTTCCAGGGGCGCAGGCTGGAGAACCTGGACCG
CTTCACCTCTCCCCGCCAGGTATTCGATTACTTCCATTATGAACTGCGCGACTGCCGCAGGGAGTACTTCCTGGTGCTGC
TGCTGGACGGCAAGAATCGCATCATCCGCCGGGTGCAGGTGTCCGAGGGATCGCTGAACCAGAGCATCGTCCACCCCCGC
GAGGTGTTCTGCCAGGCGGTGAAAGAGTCGGCCGCGGCCGTCATCCTGGTGCACAACCATCCCACCGGTGACCCGACACC
CAGCCAGGAGGATATCGCCATCACCCGCCGTCTGAAGGAAGCGGGCGAAATCATGGGCATCCGCGTGCTGGATCACATCA
TCATCGGCGACGGGGAGTACCTCAGTTTCGTTGAGCGCGGGGTGCTGTAG

Upstream 100 bases:

>100_bases
GTATCGACTCATTGCCGGCGGGGCTGTGGTGTCGGTAATCCTGACCGGGATCAGCGGGTAGCCGGACTCTGGTATACTCT
CCCGCAGGGAGGGTTGGCTG

Downstream 100 bases:

>100_bases
GAGTGAAGAATGAGGAGTGAGGAGTGAGTGATTTAATCCGTTGCGCCTGGGCTGGCGATGATCCGCTCTACCGCGCCTAC
CACGATTGCGAGTGGGGGGT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MCPGIREWPEDERPREKMLRKGAASLSDAELLALIIRTGDTATGKSAIDLGRELISLFGSSLRELGSADMAEITAIKGMG
MAKAAGVKAAFTLASRFQGRRLENLDRFTSPRQVFDYFHYELRDCRREYFLVLLLDGKNRIIRRVQVSEGSLNQSIVHPR
EVFCQAVKESAAAVILVHNHPTGDPTPSQEDIAITRRLKEAGEIMGIRVLDHIIIGDGEYLSFVERGVL

Sequences:

>Translated_229_residues
MCPGIREWPEDERPREKMLRKGAASLSDAELLALIIRTGDTATGKSAIDLGRELISLFGSSLRELGSADMAEITAIKGMG
MAKAAGVKAAFTLASRFQGRRLENLDRFTSPRQVFDYFHYELRDCRREYFLVLLLDGKNRIIRRVQVSEGSLNQSIVHPR
EVFCQAVKESAAAVILVHNHPTGDPTPSQEDIAITRRLKEAGEIMGIRVLDHIIIGDGEYLSFVERGVL
>Mature_229_residues
MCPGIREWPEDERPREKMLRKGAASLSDAELLALIIRTGDTATGKSAIDLGRELISLFGSSLRELGSADMAEITAIKGMG
MAKAAGVKAAFTLASRFQGRRLENLDRFTSPRQVFDYFHYELRDCRREYFLVLLLDGKNRIIRRVQVSEGSLNQSIVHPR
EVFCQAVKESAAAVILVHNHPTGDPTPSQEDIAITRRLKEAGEIMGIRVLDHIIIGDGEYLSFVERGVL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=41.588785046729, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1788997, Length=144, Percent_Identity=42.3611111111111, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI2367100, Length=142, Percent_Identity=41.5492957746479, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788312, Length=138, Percent_Identity=41.304347826087, Blast_Score=104, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3582_PELPD (A1AV03)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_903231.1
- ProteinModelPortal:   A1AV03
- SMR:   A1AV03
- STRING:   A1AV03
- GeneID:   4572053
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_3582
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   GRTHEVF
- PhylomeDB:   A1AV03
- ProtClustDB:   PRK00024
- InterPro:   IPR001405
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466

EC number: NA

Molecular weight: Translated: 25496; Mature: 25496

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCPGIREWPEDERPREKMLRKGAASLSDAELLALIIRTGDTATGKSAIDLGRELISLFGS
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
SLRELGSADMAEITAIKGMGMAKAAGVKAAFTLASRFQGRRLENLDRFTSPRQVFDYFHY
HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
ELRDCRREYFLVLLLDGKNRIIRRVQVSEGSLNQSIVHPREVFCQAVKESAAAVILVHNH
HHHHHHHHEEEEEEECCCCCEEHEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECC
PTGDPTPSQEDIAITRRLKEAGEIMGIRVLDHIIIGDGEYLSFVERGVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MCPGIREWPEDERPREKMLRKGAASLSDAELLALIIRTGDTATGKSAIDLGRELISLFGS
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
SLRELGSADMAEITAIKGMGMAKAAGVKAAFTLASRFQGRRLENLDRFTSPRQVFDYFHY
HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
ELRDCRREYFLVLLLDGKNRIIRRVQVSEGSLNQSIVHPREVFCQAVKESAAAVILVHNH
HHHHHHHHEEEEEEECCCCCEEHEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECC
PTGDPTPSQEDIAITRRLKEAGEIMGIRVLDHIIIGDGEYLSFVERGVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA