Click here to switch to the map view.

The map label for this gene is nifB [H]

Identifier: 118581888

GI number: 118581888

Start: 3852934

End: 3853263

Strand: Reverse

Name: nifB [H]

Synonym: Ppro_3488

Alternate gene names: 118581888

Gene position: 3853263-3852934 (Counterclockwise)

Preceding gene: 118581889

Following gene: 118581887

Centisome position: 96.14

GC content: 60.3

Gene sequence:

>330_bases
ATGCTAATCGCGGTTGCATCCAAGGATGGCAAGGAGATCAATCAGCACTTCGGCCATGCCGAACGGTTCCTGATTTACGA
GGTCGAAGGGGAAGGCGTCACGCTGGTTGACGAGAAGAGGGTCGAACGTTACTGCAGCTTCGATCCCCAGAACCCGCTGC
GCAGCCATGTGCTCAGGGGAATCGCCGAGGCGCTGGACGGATGCCGGGCCGTGGTAACCGCCCAGATGGGTGAGCATCCC
CGCCAGGAGCTGGAGCATCTGGGGATCGAACCCTACGTCATAACCGGACCGATCAAGGCGACACTGCAGGATCTGGCCCG
GATACTCTGA

Upstream 100 bases:

>100_bases
GGATCGGAGATCGGGGACCGGGAAAAGAGGGTTGCTTGTTGTCTGATTTTTCCGGTTCCCGGTCCCTCGTCCCCGGTCCC
CGCTGTTAAGGAGGCGCGTC

Downstream 100 bases:

>100_bases
CCGGCGAGGCAGAACAGGGAACTACCCCTTTCACGACGAGGTGATTATCCATGATCCACGGTTCCTTCAATTTCTGCTCT
GTTCCACCCTGGGTGATCGC

Product: dinitrogenase iron-molybdenum cofactor biosynthesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MLIAVASKDGKEINQHFGHAERFLIYEVEGEGVTLVDEKRVERYCSFDPQNPLRSHVLRGIAEALDGCRAVVTAQMGEHP
RQELEHLGIEPYVITGPIKATLQDLARIL

Sequences:

>Translated_109_residues
MLIAVASKDGKEINQHFGHAERFLIYEVEGEGVTLVDEKRVERYCSFDPQNPLRSHVLRGIAEALDGCRAVVTAQMGEHP
RQELEHLGIEPYVITGPIKATLQDLARIL
>Mature_109_residues
MLIAVASKDGKEINQHFGHAERFLIYEVEGEGVTLVDEKRVERYCSFDPQNPLRSHVLRGIAEALDGCRAVVTAQMGEHP
RQELEHLGIEPYVITGPIKATLQDLARIL

Specific function: Probably involved in the synthesis of the Fe-Mo cofactor [H]

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the moaA/nifB/pqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003731
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR005980
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02579 Nitro_FeMo-Co; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 12206; Mature: 12206

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAVASKDGKEINQHFGHAERFLIYEVEGEGVTLVDEKRVERYCSFDPQNPLRSHVLRG
CEEEEECCCCHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHCCCCCCHHHHHHHHH
IAEALDGCRAVVTAQMGEHPRQELEHLGIEPYVITGPIKATLQDLARIL
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHC
>Mature Secondary Structure
MLIAVASKDGKEINQHFGHAERFLIYEVEGEGVTLVDEKRVERYCSFDPQNPLRSHVLRG
CEEEEECCCCHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHCCCCCCHHHHHHHHH
IAEALDGCRAVVTAQMGEHPRQELEHLGIEPYVITGPIKATLQDLARIL
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2450865 [H]